HL_1VWW_057

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAGCGUUCAUAGCGACG

Length

19 nucleotides

Bulged bases

1VWW|1|5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48254.4

Basepair signature

cWW-cWH-R-R-R-R

Number of instances in this motif group

6

Unit IDs

1VWW|1|5|C|4412
1VWW|1|5|C|4413
1VWW|1|5|A|4414
1VWW|1|5|A|4415
1VWW|1|5|G|4416
1VWW|1|5|C|4417
1VWW|1|5|G|4418
1VWW|1|5|U|4419
1VWW|1|5|U|4420
1VWW|1|5|C|4421
1VWW|1|5|A|4422
1VWW|1|5|U|4423
1VWW|1|5|A|4424
1VWW|1|5|G|4425
1VWW|1|5|C|4426
1VWW|1|5|G|4427
1VWW|1|5|A|4428
1VWW|1|5|C|4429
1VWW|1|5|G|4430

Current chains

Chain 5

28S ribosomal RNA

Nearby chains