HL_1VWW_058

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGCAGAAUUC

Length

12 nucleotides

Bulged bases

1VWW|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_94813.1

Basepair signature

cWW-cWW-R-tWH-R-R-R-R

Number of instances in this motif group

1

Unit IDs

1VWW|1|5|G|4472
1VWW|1|5|A|4473
1VWW|1|5|A|4474
1VWW|1|5|G|4475
1VWW|1|5|C|4476
1VWW|1|5|A|4477
1VWW|1|5|G|4478
1VWW|1|5|A|4479
1VWW|1|5|A|4480
1VWW|1|5|U|4481
1VWW|1|5|U|4482
1VWW|1|5|C|4483

Current chains

Chain 5

28S ribosomal RNA

Nearby chains