HL_1VX2_011

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGACCCGGG

Length

11 nucleotides

Bulged bases

1VX2|1|2|A|500, 1VX2|1|2|C|502, 1VX2|1|2|C|503

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_58052.1

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|C|496
1VX2|1|2|C|497
1VX2|1|2|C|498
1VX2|1|2|G|499
1VX2|1|2|A|500
1VX2|1|2|C|501
1VX2|1|2|C|502
1VX2|1|2|C|503
1VX2|1|2|G|504
1VX2|1|2|G|505
1VX2|1|2|G|506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain Y

Ribosomal protein eS24