Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1VX2_0011/2/7:17No text annotation
geometric
HL_8CRE_191
HL_31940.1
HL_1VX2_0021/2/69:80No text annotation
HL_1VX2_0401/2/152:166No text annotation
HL_1VX2_0041/2/197:202GNRA
geometric
HL_5J7L_007
NA
HL_1VX2_0411/2/223:298No text annotation
HL_1VX2_0061/2/322:329No text annotation
HL_1VX2_0421/2/375:389No text annotation
HL_1VX2_0431/2/413:424No text annotation
HL_1VX2_0091/2/441:452No text annotation
geometric
HL_8CRE_200
HL_86432.1
HL_1VX2_0101/2/462:467UNCG
geometric
HL_8ID2_001
HL_61337.1
HL_1VX2_0111/2/496:506No text annotation
HL_1VX2_0121/2/539:544GNRA
geometric
HL_5J7L_007
NA
HL_1VX2_0441/2/566:584No text annotation
HL_1VX2_0141/2/618:623No text annotation
geometric
HL_8P9A_204
HL_93535.2
HL_1VX2_0151/2/698:732No text annotation
HL_1VX2_0161/2/745:796No text annotation
HL_1VX2_0171/2/833:841No text annotation
HL_1VX2_0181/2/885:901No text annotation
HL_1VX2_0451/2/956:967No text annotation
HL_1VX2_0201/2/1054:1064No text annotation
geometric
HL_5J7L_017
NA
HL_1VX2_0211/2/1108:1124No text annotation
HL_1VX2_0221/2/1141:1146GNRA
geometric
HL_6UFH_005
NA
HL_1VX2_0231/2/1178:1183GNRA
geometric
HL_6CB3_006
HL_34789.1
HL_1VX2_0241/2/1280:1317No text annotation
HL_1VX2_0251/2/1353:1358GNRA
geometric
HL_5J7L_023
NA
HL_1VX2_0461/2/1420:1427GNRA with extra cWH
geometric
HL_7QR8_003
NA
HL_1VX2_0281/2/1460:1466No text annotation
geometric
HL_1F1T_001
NA
HL_1VX2_0291/2/1565:1570GNRA
geometric
HL_6YMC_001
HL_34789.1
HL_1VX2_0301/2/1614:1625No text annotation
geometric
HL_8P9A_222
HL_50951.1
HL_1VX2_0311/2/1656:1668No text annotation
HL_1VX2_0471/2/1761:1771No text annotation
HL_1VX2_0331/2/1847:1852GNRA variation
geometric
HL_8CRE_225
HL_34789.1
HL_1VX2_0351/5/32:38Pseudoknot geometry
geometric
HL_5VPO_138
HL_78364.1
HL_1VX2_0361/5/52:62No text annotation
homologous
HL_4V7M_040
HL_50951.1
HL_1VX2_0371/6/14:22No text annotation
homologous
HL_2AKE_001
NA
HL_1VX2_0381/6/30:40No text annotation
homologous
HL_6GSL_238
NA
HL_1VX2_0391/6/55:58No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1VX2_0011/2/23:29,
1/2/645:651
No text annotation
IL_1VX2_0021/2/34:36,
1/2/519:521
Isolated non-canonical cWW pair
geometric
IL_9D5J_002
IL_01003.1
IL_1VX2_0031/2/37:40,
1/2/514:518
No text annotation
IL_1VX2_0041/2/41:47,
1/2/479:481
No text annotation
geometric
IL_8P9A_376
IL_88082.2
IL_1VX2_0901/2/57:62,
1/2/86:88
No text annotation
geometric
IL_8P9A_378
IL_61299.5
IL_1VX2_0911/2/62:68,
1/2/81:86
No text annotation
IL_1VX2_0921/2/108:116,
1/2/347:353
No text annotation
IL_1VX2_0931/2/116:122,
1/2/342:347
No text annotation
IL_1VX2_0161/2/317:320,
1/2/331:333
No text annotation
geometric
IL_8P9A_389
IL_15698.4
IL_1VX2_0171/2/358:364,
1/2/396:404
No text annotation
IL_1VX2_0941/2/366:372,
1/2/392:394
No text annotation
IL_1VX2_0191/2/411:413,
1/2/424:429
No text annotation
IL_1VX2_0211/2/437:439,
1/2/454:456
Isolated cWH basepair
geometric
IL_5F5F_001
IL_10892.1
IL_1VX2_0221/2/487:489,
1/2/511:512
Single bulged U
geometric
IL_4LFB_014
IL_97561.1
IL_1VX2_0231/2/491:495,
1/2/508:509
C-loop
geometric
IL_4LFB_015
IL_26900.1
IL_1VX2_0241/2/495:496,
1/2/506:508
Single bulged G
geometric
IL_8P9A_398
IL_28408.1
IL_1VX2_0251/2/528:537,
1/2/546:557
No text annotation
IL_1VX2_0951/2/599:617,
1/2/624:637
No text annotation
IL_1VX2_0291/2/663:665,
1/2/1162:1164
Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_1VX2_0301/2/665:671,
1/2/1161:1162
No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_1VX2_0961/2/673:680,
1/2/1025:1032
No text annotation
IL_1VX2_0341/2/802:803,
1/2/860:863
Major groove minor groove platform; mini C-loop
geometric
IL_1S03_003
IL_73108.1
IL_1VX2_0351/2/803:807,
1/2/856:860
Triple non-canonical cWW pairs
geometric
IL_8VMB_003
NA
IL_1VX2_0971/2/807:831,
1/2/843:856
No text annotation
IL_1VX2_0371/2/873:879,
1/2/907:912
No text annotation
IL_1VX2_0401/2/922:923,
1/2/1019:1022
Major groove platform; stack outside cWW
geometric
IL_8P9A_417
IL_74641.1
IL_1VX2_0411/2/924:931,
1/2/1010:1018
No text annotation
IL_1VX2_0421/2/931:935,
1/2/1007:1010
Tandem non-canonical cWW pairs
geometric
IL_8P9A_420
IL_15225.1
IL_1VX2_0431/2/938:941,
1/2/985:1004
No text annotation
IL_1VX2_0441/2/942:945,
1/2/981:984
Tandem non-canonical cWW pairs
geometric
IL_8P9A_421
IL_15225.1
IL_1VX2_0981/2/949:956,
1/2/967:977
No text annotation
IL_1VX2_0471/2/1041:1047,
1/2/1071:1074
No text annotation
IL_1VX2_0991/2/1047:1054,
1/2/1064:1071
No text annotation
IL_1VX2_1001/2/1168:1178,
1/2/1183:1191
No text annotation
IL_1VX2_0531/2/1214:1217,
1/2/1681:1685
C-loop
geometric
IL_8CRE_445
IL_63596.12
IL_1VX2_0541/2/1230:1233,
1/2/1525:1528
Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.1
IL_1VX2_0551/2/1235:1236,
1/2/1521:1523
Minor groove platform
geometric
IL_8CRE_447
IL_34520.1
IL_1VX2_1011/2/1237:1266,
1/2/1516:1520
No text annotation
IL_1VX2_0571/2/1325:1327,
1/2/1502:1503
No text annotation
geometric
IL_8CRE_451
IL_97561.1
IL_1VX2_1021/2/1329:1335,
1/2/1492:1500
No text annotation
geometric
IL_8P9A_439
IL_99893.1
IL_1VX2_0601/2/1337:1338,
1/2/1488:1490
Single bulged A
geometric
IL_8CRE_455
IL_14190.1
IL_1VX2_0621/2/1347:1349,
1/2/1380:1382
Isolated non-canonical cWW pair
geometric
IL_8CRE_456
IL_01003.1
IL_1VX2_1031/2/1350:1351,
1/2/1360:1379
No text annotation
IL_1VX2_0641/2/1395:1399,
1/2/1447:1450
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_1VX2_0651/2/1402:1406,
1/2/1440:1444
No text annotation
IL_1VX2_0661/2/1407:1413,
1/2/1433:1439
No text annotation
IL_1VX2_0681/2/1415:1419,
1/2/1428:1431
No text annotation
IL_1VX2_1041/2/1541:1550,
1/2/1582:1592
No text annotation
IL_1VX2_0691/2/1550:1558,
1/2/1577:1582
No text annotation
IL_1VX2_0701/2/1559:1563,
1/2/1572:1576
No text annotation
IL_1VX2_0721/2/1700:1702,
1/2/1833:1836
No text annotation
geometric
IL_4LFB_056
IL_18228.1
IL_1VX2_0731/2/1702:1705,
1/2/1829:1833
No text annotation
geometric
IL_8P9A_453
IL_25873.1
IL_1VX2_0741/2/1706:1712,
1/2/1821:1828
No text annotation
IL_1VX2_0751/2/1713:1716,
1/2/1817:1820
Tandem non-canonical cWW pairs
geometric
IL_5LQT_002
NA
IL_1VX2_0761/2/1717:1723,
1/2/1811:1816
No text annotation
IL_1VX2_1051/2/1726:1731,
1/2/1803:1808
Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.2
IL_1VX2_1061/2/1733:1736,
1/2/1798:1801
Double sheared
geometric
IL_8CRE_474
IL_58355.1
IL_1VX2_1071/2/1739:1746,
1/2/1788:1795
No text annotation
IL_1VX2_1081/2/1748:1752,
1/2/1780:1786
No text annotation
IL_1VX2_0861/6/12:14,
1/6/22:24
No text annotation
IL_1VX2_0891/6/51:55,
1/6/58:64
No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1VX2_0061/2/40:41,
1/2/481:487,
1/2/512:514
No text annotation
geometric
J3_8P9A_068
J3_58657.1
J3_1VX2_0071/2/682:685,
1/2/917:922,
1/2/1022:1023
No text annotation
J3_1VX2_0081/2/682:685,
1/2/917:923,
1/2/1019:1023
No text annotation
J3_1VX2_0091/2/1091:1103,
1/2/1129:1140,
1/2/1147:1158
No text annotation
J3_1VX2_0101/2/1218:1223,
1/2/1643:1651,
1/2/1673:1680
No text annotation
J3_1VX2_0031/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641
No text annotation
geometric
J3_8P9A_077
J3_44359.1
J3_1VX2_0041/2/1270:1277,
1/2/1320:1324,
1/2/1504:1512
No text annotation
J3_1VX2_0051/2/1340:1345,
1/2/1384:1389,
1/2/1481:1486
No text annotation
J3_1VX2_0111/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479
No text annotation
J3_1VX2_0121/2/1532:1540,
1/2/1593:1610,
1/2/1629:1638
No text annotation
J3_1VX2_0131/5/7:28,
1/5/42:49,
1/5/65:66
No text annotation
J4_1VX2_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432
No text annotation
J4_1VX2_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161
No text annotation
J4_1VX2_0031/6/7:12,
1/6/24:27,
1/6/43:51,
1/6/64:67
No text annotation
J5_1VX2_0011/2/30:34,
1/2/521:527,
1/2/558:565,
1/2/585:596,
1/2/640:644
No text annotation
J5_1VX2_0021/2/49:56,
1/2/89:96,
1/2/434:436,
1/2/457:462,
1/2/467:477
No text annotation
J5_1VX2_0031/2/123:151,
1/2/167:192,
1/2/207:222,
1/2/299:314,
1/2/336:341
No text annotation
J5_1VX2_0041/2/685:696,
1/2/734:744,
1/2/797:800,
1/2/865:873,
1/2/912:917
No text annotation

Problematic loops

No problematic loops


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