1VX2 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1VX2_001 | 1/2/7:17 | No text annotation | geometric HL_8CRE_191 HL_73535.1 | |
| HL_1VX2_002 | 1/2/69:80 | No text annotation | ||
| HL_1VX2_040 | 1/2/152:166 | No text annotation | ||
| HL_1VX2_004 | 1/2/197:202 | GNRA | geometric HL_5J7L_007 NA | |
| HL_1VX2_041 | 1/2/223:298 | No text annotation | ||
| HL_1VX2_006 | 1/2/322:329 | No text annotation | ||
| HL_1VX2_042 | 1/2/375:389 | No text annotation | ||
| HL_1VX2_043 | 1/2/413:424 | No text annotation | ||
| HL_1VX2_009 | 1/2/441:452 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_1VX2_010 | 1/2/462:467 | UNCG | geometric HL_8ID2_001 HL_61337.2 | |
| HL_1VX2_011 | 1/2/496:506 | No text annotation | ||
| HL_1VX2_012 | 1/2/539:544 | GNRA | geometric HL_5J7L_007 NA | |
| HL_1VX2_044 | 1/2/566:584 | No text annotation | ||
| HL_1VX2_014 | 1/2/618:623 | No text annotation | geometric HL_8P9A_204 HL_93535.2 | |
| HL_1VX2_015 | 1/2/698:732 | No text annotation | ||
| HL_1VX2_016 | 1/2/745:796 | No text annotation | ||
| HL_1VX2_017 | 1/2/833:841 | No text annotation | ||
| HL_1VX2_018 | 1/2/885:901 | No text annotation | ||
| HL_1VX2_045 | 1/2/956:967 | No text annotation | ||
| HL_1VX2_020 | 1/2/1054:1064 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_1VX2_021 | 1/2/1108:1124 | No text annotation | ||
| HL_1VX2_022 | 1/2/1141:1146 | GNRA | geometric HL_6UFH_005 HL_34789.2 | |
| HL_1VX2_023 | 1/2/1178:1183 | GNRA | geometric HL_6CB3_006 HL_34789.2 | |
| HL_1VX2_024 | 1/2/1280:1317 | No text annotation | ||
| HL_1VX2_025 | 1/2/1353:1358 | GNRA | geometric HL_5J7L_023 NA | |
| HL_1VX2_046 | 1/2/1420:1427 | GNRA with extra cWH | geometric HL_7QR8_003 NA | |
| HL_1VX2_028 | 1/2/1460:1466 | No text annotation | geometric HL_1F1T_001 NA | |
| HL_1VX2_029 | 1/2/1565:1570 | GNRA | geometric HL_6YMC_001 HL_34789.2 | |
| HL_1VX2_030 | 1/2/1614:1625 | No text annotation | geometric HL_8P9A_222 HL_50951.1 | |
| HL_1VX2_031 | 1/2/1656:1668 | No text annotation | ||
| HL_1VX2_047 | 1/2/1761:1771 | No text annotation | ||
| HL_1VX2_033 | 1/2/1847:1852 | GNRA variation | geometric HL_8CRE_225 HL_34789.2 | |
| HL_1VX2_035 | 1/5/32:38 | Pseudoknot geometry | geometric HL_5VPO_138 HL_46333.1 | |
| HL_1VX2_036 | 1/5/52:62 | No text annotation | homologous HL_4V7M_040 HL_50951.1 | |
| HL_1VX2_037 | 1/6/14:22 | No text annotation | homologous HL_2AKE_001 NA | |
| HL_1VX2_038 | 1/6/30:40 | No text annotation | homologous HL_6GSL_238 NA | |
| HL_1VX2_039 | 1/6/55:58 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1VX2_001 | 1/2/23:29, 1/2/645:651 | No text annotation | ||
| IL_1VX2_002 | 1/2/34:36, 1/2/519:521 | Isolated non-canonical cWW pair | geometric IL_9D5J_002 IL_01003.2 | |
| IL_1VX2_003 | 1/2/37:40, 1/2/514:518 | No text annotation | ||
| IL_1VX2_004 | 1/2/41:47, 1/2/479:481 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_1VX2_090 | 1/2/57:62, 1/2/86:88 | No text annotation | geometric IL_8P9A_378 IL_61299.6 | |
| IL_1VX2_091 | 1/2/62:68, 1/2/81:86 | No text annotation | ||
| IL_1VX2_092 | 1/2/108:116, 1/2/347:353 | No text annotation | ||
| IL_1VX2_093 | 1/2/116:122, 1/2/342:347 | No text annotation | ||
| IL_1VX2_016 | 1/2/317:320, 1/2/331:333 | No text annotation | geometric IL_8P9A_389 IL_15698.5 | |
| IL_1VX2_017 | 1/2/358:364, 1/2/396:404 | No text annotation | ||
| IL_1VX2_094 | 1/2/366:372, 1/2/392:394 | No text annotation | ||
| IL_1VX2_019 | 1/2/411:413, 1/2/424:429 | No text annotation | ||
| IL_1VX2_021 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | geometric IL_5F5F_001 IL_10892.2 | |
| IL_1VX2_022 | 1/2/487:489, 1/2/511:512 | Single bulged U | geometric IL_4LFB_014 IL_97561.2 | |
| IL_1VX2_023 | 1/2/491:495, 1/2/508:509 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_1VX2_024 | 1/2/495:496, 1/2/506:508 | Single bulged G | geometric IL_8P9A_398 IL_28408.2 | |
| IL_1VX2_025 | 1/2/528:537, 1/2/546:557 | No text annotation | ||
| IL_1VX2_095 | 1/2/599:617, 1/2/624:637 | No text annotation | ||
| IL_1VX2_029 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_1VX2_030 | 1/2/665:671, 1/2/1161:1162 | No text annotation | geometric IL_4LFB_022 IL_20847.1 | |
| IL_1VX2_096 | 1/2/673:680, 1/2/1025:1032 | No text annotation | ||
| IL_1VX2_034 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_003 IL_73108.2 | |
| IL_1VX2_035 | 1/2/803:807, 1/2/856:860 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 IL_71154.2 | |
| IL_1VX2_097 | 1/2/807:831, 1/2/843:856 | No text annotation | ||
| IL_1VX2_037 | 1/2/873:879, 1/2/907:912 | No text annotation | ||
| IL_1VX2_040 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.2 | |
| IL_1VX2_041 | 1/2/924:931, 1/2/1010:1018 | No text annotation | ||
| IL_1VX2_042 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_8P9A_420 IL_15225.2 | |
| IL_1VX2_043 | 1/2/938:941, 1/2/985:1004 | No text annotation | ||
| IL_1VX2_044 | 1/2/942:945, 1/2/981:984 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_15225.2 | |
| IL_1VX2_098 | 1/2/949:956, 1/2/967:977 | No text annotation | ||
| IL_1VX2_047 | 1/2/1041:1047, 1/2/1071:1074 | No text annotation | ||
| IL_1VX2_099 | 1/2/1047:1054, 1/2/1064:1071 | No text annotation | ||
| IL_1VX2_100 | 1/2/1168:1178, 1/2/1183:1191 | No text annotation | ||
| IL_1VX2_053 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_1VX2_054 | 1/2/1230:1233, 1/2/1525:1528 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_1VX2_055 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | geometric IL_8CRE_447 IL_34520.2 | |
| IL_1VX2_101 | 1/2/1237:1266, 1/2/1516:1520 | No text annotation | ||
| IL_1VX2_057 | 1/2/1325:1327, 1/2/1502:1503 | No text annotation | geometric IL_8CRE_451 IL_97561.2 | |
| IL_1VX2_102 | 1/2/1329:1335, 1/2/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_1VX2_060 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | geometric IL_8CRE_455 IL_14190.2 | |
| IL_1VX2_062 | 1/2/1347:1349, 1/2/1380:1382 | Isolated non-canonical cWW pair | geometric IL_8CRE_456 IL_87720.1 | |
| IL_1VX2_103 | 1/2/1350:1351, 1/2/1360:1379 | No text annotation | ||
| IL_1VX2_064 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_1VX2_065 | 1/2/1402:1406, 1/2/1440:1444 | No text annotation | ||
| IL_1VX2_066 | 1/2/1407:1413, 1/2/1433:1439 | No text annotation | ||
| IL_1VX2_068 | 1/2/1415:1419, 1/2/1428:1431 | No text annotation | ||
| IL_1VX2_104 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_1VX2_069 | 1/2/1550:1558, 1/2/1577:1582 | No text annotation | ||
| IL_1VX2_070 | 1/2/1559:1563, 1/2/1572:1576 | No text annotation | ||
| IL_1VX2_072 | 1/2/1700:1702, 1/2/1833:1836 | No text annotation | geometric IL_4LFB_056 IL_18228.1 | |
| IL_1VX2_073 | 1/2/1702:1705, 1/2/1829:1833 | No text annotation | geometric IL_8P9A_453 IL_25873.2 | |
| IL_1VX2_074 | 1/2/1706:1712, 1/2/1821:1828 | No text annotation | ||
| IL_1VX2_075 | 1/2/1713:1716, 1/2/1817:1820 | Tandem non-canonical cWW pairs | geometric IL_5LQT_002 IL_15225.2 | |
| IL_1VX2_076 | 1/2/1717:1723, 1/2/1811:1816 | No text annotation | ||
| IL_1VX2_105 | 1/2/1726:1731, 1/2/1803:1808 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_1VX2_106 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | geometric IL_8CRE_474 IL_58355.2 | |
| IL_1VX2_107 | 1/2/1739:1746, 1/2/1788:1795 | No text annotation | ||
| IL_1VX2_108 | 1/2/1748:1752, 1/2/1780:1786 | No text annotation | ||
| IL_1VX2_086 | 1/6/12:14, 1/6/22:24 | No text annotation | ||
| IL_1VX2_089 | 1/6/51:55, 1/6/58:64 | No text annotation |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1VX2_006 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_8P9A_068 J3_58657.1 | |
| J3_1VX2_007 | 1/2/682:685, 1/2/917:922, 1/2/1022:1023 | No text annotation | ||
| J3_1VX2_008 | 1/2/682:685, 1/2/917:923, 1/2/1019:1023 | No text annotation | ||
| J3_1VX2_009 | 1/2/1091:1103, 1/2/1129:1140, 1/2/1147:1158 | No text annotation | ||
| J3_1VX2_010 | 1/2/1218:1223, 1/2/1643:1651, 1/2/1673:1680 | No text annotation | ||
| J3_1VX2_003 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | geometric J3_8P9A_077 J3_44359.1 | |
| J3_1VX2_004 | 1/2/1270:1277, 1/2/1320:1324, 1/2/1504:1512 | No text annotation | ||
| J3_1VX2_005 | 1/2/1340:1345, 1/2/1384:1389, 1/2/1481:1486 | No text annotation | ||
| J3_1VX2_011 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_1VX2_012 | 1/2/1532:1540, 1/2/1593:1610, 1/2/1629:1638 | No text annotation | ||
| J3_1VX2_013 | 1/5/7:28, 1/5/42:49, 1/5/65:66 | No text annotation | ||
| J4_1VX2_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | ||
| J4_1VX2_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | ||
| J4_1VX2_003 | 1/6/7:12, 1/6/24:27, 1/6/43:51, 1/6/64:67 | No text annotation | ||
| J5_1VX2_001 | 1/2/30:34, 1/2/521:527, 1/2/558:565, 1/2/585:596, 1/2/640:644 | No text annotation | ||
| J5_1VX2_002 | 1/2/49:56, 1/2/89:96, 1/2/434:436, 1/2/457:462, 1/2/467:477 | No text annotation | ||
| J5_1VX2_003 | 1/2/123:151, 1/2/167:192, 1/2/207:222, 1/2/299:314, 1/2/336:341 | No text annotation | ||
| J5_1VX2_004 | 1/2/685:696, 1/2/734:744, 1/2/797:800, 1/2/865:873, 1/2/912:917 | No text annotation |
Problematic loops
No problematic loops
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