HL_1VX2_016

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCUCGGCCGGGGCCCGAAG

Length

21 nucleotides

Bulged bases

1VX2|1|2|C|748, 1VX2|1|2|U|749, 1VX2|1|2|C|753, 1VX2|1|2|C|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|745
1VX2|1|2|C|746
1VX2|1|2|U|747
1VX2|1|2|C|748
1VX2|1|2|U|749
1VX2|1|2|C|750
1VX2|1|2|G|751
1VX2|1|2|G|752
1VX2|1|2|C|753
1VX2|1|2|C|785
1VX2|1|2|G|786
1VX2|1|2|G|787
1VX2|1|2|G|788
1VX2|1|2|G|789
1VX2|1|2|C|790
1VX2|1|2|C|791
1VX2|1|2|C|792
1VX2|1|2|G|793
1VX2|1|2|A|794
1VX2|1|2|A|795
1VX2|1|2|G|796

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17