HL_1VX2_017

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

1VX2|1|2|G|836, 1VX2|1|2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63323.1

Basepair signature

cWW-R-cWH-R-R-R-R

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|C|833
1VX2|1|2|C|834
1VX2|1|2|C|835
1VX2|1|2|G|836
1VX2|1|2|A|837
1VX2|1|2|G|838
1VX2|1|2|C|839
1VX2|1|2|C|840
1VX2|1|2|G|841

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

Ribosomal protein eS24