3D structure

PDB id
1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
1VX2|1|2|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_46175.5
Basepair signature
cWW-R-tSH-R-R-R-R
Number of instances in this motif group
18

Unit IDs

1VX2|1|2|G|1054
1VX2|1|2|A|1055
1VX2|1|2|U|1056
1VX2|1|2|C|1057
1VX2|1|2|A|1058
1VX2|1|2|G|1059
1VX2|1|2|A|1060
1VX2|1|2|U|1061
1VX2|1|2|A|1062
1VX2|1|2|C|1063
1VX2|1|2|C|1064

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 4
Messenger RNA
Chain 6
P/E tRNA
Chain O
Ribosomal protein uS11
Chain a
Ribosomal protein eS26

Coloring options:

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