HL_1VX2_020

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

1VX2|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46175.5

Basepair signature

cWW-R-tSH-R-R-R-R

Number of instances in this motif group

18

Unit IDs

1VX2|1|2|G|1054
1VX2|1|2|A|1055
1VX2|1|2|U|1056
1VX2|1|2|C|1057
1VX2|1|2|A|1058
1VX2|1|2|G|1059
1VX2|1|2|A|1060
1VX2|1|2|U|1061
1VX2|1|2|A|1062
1VX2|1|2|C|1063
1VX2|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 4

Messenger RNA

Chain 6

Transfer RNA; tRNA

Chain O

Ribosomal protein uS11

Chain a

Ribosomal protein eS26