HL_1VX2_021

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGUUAUUCCCAUGACC

Length

17 nucleotides

Bulged bases

1VX2|1|2|C|1109, 1VX2|1|2|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24422.1

Basepair signature

cWW-R-cWW-R-tSH-R-R-cHW-R-R

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|G|1108
1VX2|1|2|C|1109
1VX2|1|2|G|1110
1VX2|1|2|U|1111
1VX2|1|2|U|1112
1VX2|1|2|A|1113
1VX2|1|2|U|1114
1VX2|1|2|U|1115
1VX2|1|2|C|1116
1VX2|1|2|C|1117
1VX2|1|2|C|1118
1VX2|1|2|A|1119
1VX2|1|2|U|1120
1VX2|1|2|G|1121
1VX2|1|2|A|1122
1VX2|1|2|C|1123
1VX2|1|2|C|1124

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uS2

Chain B

Ribosomal protein eS1

Chain R

Ribosomal protein eS17

Chain b

Ribosomal protein eS27