HL_1VX2_028

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

1VX2|1|2|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33402.7

Basepair signature

cWW-tSH-R-R-R

Number of instances in this motif group

14

Unit IDs

1VX2|1|2|C|1460
1VX2|1|2|G|1461
1VX2|1|2|U|1462
1VX2|1|2|U|1463
1VX2|1|2|C|1464
1VX2|1|2|A|1465
1VX2|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eS17

Chain c

Ribosomal protein eS28