HL_1VX2_030

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

1VX2|1|2|U|1621, 1VX2|1|2|U|1622, 1VX2|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79541.1

Basepair signature

cWW-R-tWW-R-R-R

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|A|1614
1VX2|1|2|U|1615
1VX2|1|2|U|1616
1VX2|1|2|G|1617
1VX2|1|2|C|1618
1VX2|1|2|A|1619
1VX2|1|2|A|1620
1VX2|1|2|U|1621
1VX2|1|2|U|1622
1VX2|1|2|A|1623
1VX2|1|2|U|1624
1VX2|1|2|U|1625

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uS19

Chain S

Ribosomal protein uS13

Chain d

Ribosomal protein uS14