HL_1VX2_041

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGUGGUGACUCUAG

Length

15 nucleotides

Bulged bases

1VX2|1|2|A|292, 1VX2|1|2|C|293, 1VX2|1|2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|223
1VX2|1|2|A|224
1VX2|1|2|G|225
1VX2|1|2|U|287
1VX2|1|2|G|288
1VX2|1|2|G|289
1VX2|1|2|U|290
1VX2|1|2|G|291
1VX2|1|2|A|292
1VX2|1|2|C|293
1VX2|1|2|U|294
1VX2|1|2|C|295
1VX2|1|2|U|296
1VX2|1|2|A|297
1VX2|1|2|G|298

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17