HL_1VX2_042

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGUCGCCGUGCCUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|U|375
1VX2|1|2|A|376
1VX2|1|2|G|377
1VX2|1|2|U|378
1VX2|1|2|C|379
1VX2|1|2|G|380
1VX2|1|2|C|381
1VX2|1|2|C|382
1VX2|1|2|G|383
1VX2|1|2|U|384
1VX2|1|2|G|385
1VX2|1|2|C|386
1VX2|1|2|C|387
1VX2|1|2|U|388
1VX2|1|2|A|389

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17