HL_1VX2_043

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAUCAGGGUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|413
1VX2|1|2|A|414
1VX2|1|2|A|415
1VX2|1|2|U|416
1VX2|1|2|C|417
1VX2|1|2|A|418
1VX2|1|2|G|419
1VX2|1|2|G|420
1VX2|1|2|G|421
1VX2|1|2|U|422
1VX2|1|2|U|423
1VX2|1|2|C|424

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uS5

Chain J

Ribosomal protein uS4

Chain L

Ribosomal protein uS17

Chain W

Ribosomal protein uS8

Chain X

Ribosomal protein uS12