HL_1VX2_044

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCACUUUAAAUCCUUCCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|U|566
1VX2|1|2|C|567
1VX2|1|2|C|568
1VX2|1|2|A|569
1VX2|1|2|C|570
1VX2|1|2|U|571
1VX2|1|2|U|572
1VX2|1|2|U|573
1VX2|1|2|A|574
1VX2|1|2|A|575
1VX2|1|2|A|576
1VX2|1|2|U|577
1VX2|1|2|C|578
1VX2|1|2|C|579
1VX2|1|2|U|580
1VX2|1|2|U|581
1VX2|1|2|C|582
1VX2|1|2|C|583
1VX2|1|2|G|584

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain Y

Ribosomal protein eS24