HL_1VX2_047

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGGCCCACGG

Length

11 nucleotides

Bulged bases

1VX2|1|2|C|1762, 1VX2|1|2|G|1763, 1VX2|1|2|G|1764, 1VX2|1|2|C|1765, 1VX2|1|2|C|1766, 1VX2|1|2|C|1767, 1VX2|1|2|A|1768, 1VX2|1|2|C|1769, 1VX2|1|2|G|1770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|U|1761
1VX2|1|2|C|1762
1VX2|1|2|G|1763
1VX2|1|2|G|1764
1VX2|1|2|C|1765
1VX2|1|2|C|1766
1VX2|1|2|C|1767
1VX2|1|2|A|1768
1VX2|1|2|C|1769
1VX2|1|2|G|1770
1VX2|1|2|G|1771

Current chains

Chain 2

18S ribosomal RNA

Nearby chains