HL_1VX3_007

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

1VX3|1|5|G|232, 1VX3|1|5|U|233, 1VX3|1|5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_007 not in the Motif Atlas

Geometric match to HL_4V9F_012

Geometric discrepancy: 0.2885

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

1VX3|1|5|G|230
1VX3|1|5|U|231
1VX3|1|5|G|232
1VX3|1|5|U|233
1VX3|1|5|G|234
1VX3|1|5|A|235
1VX3|1|5|G|236
1VX3|1|5|G|237
1VX3|1|5|C|238

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA