HL_1VX3_021

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

1VX3|1|5|A|1630, 1VX3|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_021 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.3534

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

1VX3|1|5|G|1627
1VX3|1|5|C|1628
1VX3|1|5|G|1629
1VX3|1|5|A|1630
1VX3|1|5|A|1631
1VX3|1|5|A|1632
1VX3|1|5|G|1633
1VX3|1|5|A|1634
1VX3|1|5|C|1635

Current chains

Chain 5

28S ribosomal RNA

Nearby chains