HL_1VX3_031

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_031 not in the Motif Atlas

Geometric match to HL_7A0S_032

Geometric discrepancy: 0.2144

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1VX3|1|5|A|2376
1VX3|1|5|C|2377
1VX3|1|5|G|2378
1VX3|1|5|A|2379
1VX3|1|5|G|2380
1VX3|1|5|A|2381
1VX3|1|5|A|2382
1VX3|1|5|C|2383
1VX3|1|5|U|2384

Current chains

Chain 5

28S ribosomal RNA

Nearby chains