HL_1VX3_046

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

1VX3|1|5|A|3642, 1VX3|1|5|A|3643, 1VX3|1|5|U|3644, 1VX3|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_046 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1642

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

1VX3|1|5|U|3639
1VX3|1|5|U|3640
1VX3|1|5|U|3641
1VX3|1|5|A|3642
1VX3|1|5|A|3643
1VX3|1|5|U|3644
1VX3|1|5|U|3645
1VX3|1|5|A|3646
1VX3|1|5|A|3647
1VX3|1|5|A|3648
1VX3|1|5|A|3649

Current chains

Chain 5

28S ribosomal RNA

Nearby chains