HL_1VX3_056

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

1VX3|1|5|A|4214, 1VX3|1|5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_056 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.2582

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1VX3|1|5|U|4210
1VX3|1|5|C|4211
1VX3|1|5|A|4212
1VX3|1|5|A|4213
1VX3|1|5|A|4214
1VX3|1|5|C|4215
1VX3|1|5|G|4216
1VX3|1|5|G|4217
1VX3|1|5|U|4218
1VX3|1|5|A|4219
1VX3|1|5|A|4220
1VX3|1|5|C|4221
1VX3|1|5|G|4222

Current chains

Chain 5

28S ribosomal RNA

Nearby chains