HL_1VX3_077

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

1VX3|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_077 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.3077

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1VX3|1|5|U|204
1VX3|1|5|C|205
1VX3|1|5|U|206
1VX3|1|5|G|207
1VX3|1|5|A|208
1VX3|1|5|U|209
1VX3|1|5|C|210
1VX3|1|5|G|211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains