HL_1VX6_007

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases (A, C, G, U)

226G, 227A, 228A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68081.8

Basepair signature

cWW-R-R-tWH

Number of instances in this motif group

13

Unit IDs

1VX6|1|A|G|224
1VX6|1|A|U|225
1VX6|1|A|G|226
1VX6|1|A|A|227
1VX6|1|A|A|228
1VX6|1|A|A|229
1VX6|1|A|G|230
1VX6|1|A|G|231
1VX6|1|A|C|232

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA