1VX6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1VX6_001 | 1/A/38:45 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_1VX6_002 | 1/A/69:74 | No text annotation | geometric HL_5TBW_002 NA | |
| HL_1VX6_003 | 1/A/90:96 | No text annotation | geometric HL_7RQB_008 NA | |
| HL_1VX6_004 | 1/A/135:142 | No text annotation | ||
| HL_1VX6_005 | 1/A/202:209 | T-loop with 2 bulged bases not stacked | geometric HL_6DN2_003 HL_01609.1 | |
| HL_1VX6_006 | 1/A/216:220 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_1VX6_007 | 1/A/224:232 | T-loop with unstacked turn | geometric HL_5J7L_144 HL_27670.1 | |
| HL_1VX6_008 | 1/A/285:294 | No text annotation | ||
| HL_1VX6_009 | 1/A/311:320 | Pseudoknot geometry | geometric HL_5TBW_009 NA | |
| HL_1VX6_010 | 1/A/365:370 | GNRA | geometric HL_4V9F_065 HL_37824.3 | |
| HL_1VX6_011 | 1/A/391:396 | GNRA | geometric HL_1MZP_001 HL_37824.3 | |
| HL_1VX6_013 | 1/A/594:599 | No text annotation | ||
| HL_1VX6_014 | 1/A/663:670 | No text annotation | ||
| HL_1VX6_015 | 1/A/718:727 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_014 NA | |
| HL_1VX6_016 | 1/A/764:775 | No text annotation | ||
| HL_1VX6_017 | 1/A/801:806 | GNRA | geometric HL_4LVW_002 HL_37824.3 | |
| HL_1VX6_020 | 1/A/963:968 | UNCG variation | geometric HL_2CZJ_007 HL_23696.2 | |
| HL_1VX6_021 | 1/A/995:1004 | No text annotation | geometric HL_4V9F_024 HL_88205.1 | |
| HL_1VX6_022 | 1/A/1029:1037 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_1VX6_023 | 1/A/1077:1082 | No text annotation | geometric HL_7RQB_025 NA | |
| HL_1VX6_024 | 1/A/1200:1208 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_1VX6_025 | 1/A/1254:1260 | GNRA | geometric HL_5TBW_025 NA | |
| HL_1VX6_026 | 1/A/1276:1283 | No text annotation | geometric HL_5TBW_026 NA | |
| HL_1VX6_029 | 1/A/1551:1556 | GNRA | geometric HL_5J7L_023 HL_37824.3 | |
| HL_1VX6_030 | 1/A/1611:1619 | T-loop with unstacked turn | geometric HL_4FRN_007 HL_27670.1 | |
| HL_1VX6_031 | 1/A/1654:1662 | No text annotation | geometric HL_7A0S_041 NA | |
| HL_1VX6_032 | 1/A/1693:1698 | GNRA | geometric HL_6JQ5_004 NA | |
| HL_1VX6_034 | 1/A/1742:1751 | No text annotation | geometric HL_4V9F_037 HL_81545.1 | |
| HL_1VX6_035 | 1/A/1783:1788 | GNRA | geometric HL_5TBW_036 NA | |
| HL_1VX6_036 | 1/A/1835:1843 | No text annotation | geometric HL_5TBW_037 NA | |
| HL_1VX6_037 | 1/A/1876:1882 | Other HL | geometric HL_4V9F_039 HL_77436.3 | |
| HL_1VX6_040 | 1/A/2014:2018 | Mini UNCG | geometric HL_5TBW_040 NA | |
| HL_1VX6_041 | 1/A/2111:2118 | No text annotation | geometric HL_5TBW_041 NA | |
| HL_1VX6_042 | 1/A/2129:2135 | GNRA | geometric HL_5TBW_042 NA | |
| HL_1VX6_043 | 1/A/2191:2196 | UNCG | geometric HL_4PMI_004 HL_34617.2 | |
| HL_1VX6_045 | 1/A/2403:2407 | No text annotation | geometric HL_5TBW_045 NA | |
| HL_1VX6_046 | 1/A/2428:2438 | No text annotation | geometric HL_4WF9_043 HL_01962.1 | |
| HL_1VX6_047 | 1/A/2458:2463 | GNRA | geometric HL_5D5L_001 HL_37824.3 | |
| HL_1VX6_048 | 1/A/2512:2519 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.1 | |
| HL_1VX6_049 | 1/A/2546:2556 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_1VX6_050 | 1/A/2585:2593 | No text annotation | geometric HL_5TBW_050 NA | |
| HL_1VX6_051 | 1/A/2662:2671 | No text annotation | geometric HL_5TBW_051 NA | |
| HL_1VX6_054 | 1/A/2955:2963 | No text annotation | geometric HL_4WF9_049 HL_85367.1 | |
| HL_1VX6_055 | 1/A/2972:2984 | No text annotation | geometric HL_5TBW_055 NA | |
| HL_1VX6_056 | 1/A/3012:3020 | No text annotation | geometric HL_5TBW_056 NA | |
| HL_1VX6_057 | 1/A/3032:3039 | Pseudoknot geometry | geometric HL_5TBW_057 NA | |
| HL_1VX6_058 | 1/A/3063:3071 | No text annotation | geometric HL_5TBW_058 NA | |
| HL_1VX6_059 | 1/A/3083:3088 | GNRA | geometric HL_5TBW_059 NA | |
| HL_1VX6_060 | 1/A/3127:3133 | No text annotation | geometric HL_7A0S_023 HL_53890.1 | |
| HL_1VX6_061 | 1/A/3199:3207 | No text annotation | geometric HL_5TBW_061 NA | |
| HL_1VX6_062 | 1/A/3256:3263 | No text annotation | geometric HL_5TBW_062 NA | |
| HL_1VX6_063 | 1/A/3279:3285 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_1VX6_064 | 1/A/3322:3327 | GNRA | geometric HL_5J7L_196 HL_37824.3 | |
| HL_1VX6_065 | 1/A/3411:3416 | GNRA | geometric HL_5J7L_197 HL_37824.3 | |
| HL_1VX6_066 | 1/A/3453:3458 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.2 | |
| HL_1VX6_067 | 1/A/3494:3509 | No text annotation | geometric HL_5TBW_067 NA | |
| HL_1VX6_068 | 1/A/3697:3705 | No text annotation | geometric HL_5J7L_201 HL_64690.5 | |
| HL_1VX6_070 | 1/B/36:41 | No text annotation | geometric HL_5NFV_001 NA | |
| HL_1VX6_071 | 1/B/86:91 | GNRA | geometric HL_5FJC_002 HL_37824.3 | |
| HL_1VX6_072 | 1/C/77:82 | GNRA | geometric HL_6JDV_001 NA | |
| HL_1VX6_073 | 1/C/111:117 | No text annotation | geometric HL_5TBW_075 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1VX6_012 | No text annotation | ||
| HL_1VX6_018 | No text annotation | ||
| HL_1VX6_019 | UNCG variation | ||
| HL_1VX6_027 | No text annotation | ||
| HL_1VX6_028 | No text annotation | ||
| HL_1VX6_033 | No text annotation | ||
| HL_1VX6_038 | No text annotation | ||
| HL_1VX6_039 | No text annotation | ||
| HL_1VX6_044 | No text annotation | ||
| HL_1VX6_052 | No text annotation | ||
| HL_1VX6_053 | No text annotation | ||
| HL_1VX6_069 | tRNA D-loop | ||
| HL_1VX6_074 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1VX6_001 | 1/A/13:15, 1/C/151:152 | Single bulged U | geometric IL_3MEI_001 IL_89505.1 | |
| IL_1VX6_002 | 1/A/27:28, 1/A/56:58 | Single stack bend | geometric IL_4WF9_007 IL_06586.1 | |
| IL_1VX6_003 | 1/A/31:38, 1/A/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_1VX6_004 | 1/A/82:89, 1/A/97:103 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_006 NA | |
| IL_1VX6_005 | 1/A/118:124, 1/A/153:159 | No text annotation | ||
| IL_1VX6_006 | 1/A/126:128, 1/A/149:151 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_1VX6_008 | 1/A/165:168, 1/A/263:266 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_54697.2 | |
| IL_1VX6_010 | 1/A/178:183, 1/A/248:252 | No text annotation | ||
| IL_1VX6_012 | 1/A/186:191, 1/A/240:245 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_1VX6_014 | 1/A/197:199, 1/A/212:213 | Single bulged U | geometric IL_4V9F_013 IL_89505.1 | |
| IL_1VX6_016 | 1/A/345:347, 1/C/29:30 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_1VX6_017 | 1/A/385:388, 1/A/399:413 | No text annotation | ||
| IL_1VX6_018 | 1/A/414:420, 1/C/17:23 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_04021.1 | |
| IL_1VX6_019 | 1/A/436:438, 1/A/709:711 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_10289.1 | |
| IL_1VX6_022 | 1/A/519:522, 1/A/633:636 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_54697.2 | |
| IL_1VX6_024 | 1/A/529:533, 1/A/619:626 | No text annotation | ||
| IL_1VX6_026 | 1/A/584:586, 1/A/605:606 | Single bulged C | geometric IL_5F5H_001 IL_61258.14 | |
| IL_1VX6_027 | 1/A/591:594, 1/A/599:600 | Multiple bulged bases | geometric IL_7Q80_001 IL_82107.2 | |
| IL_1VX6_028 | 1/A/658:661, 1/A/672:675 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_54697.2 | |
| IL_1VX6_029 | 1/A/743:745, 1/A/914:916 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_10289.1 | |
| IL_1VX6_030 | 1/A/758:762, 1/A/777:794 | No text annotation | ||
| IL_1VX6_031 | 1/A/827:833, 1/A/861:868 | No text annotation | ||
| IL_1VX6_032 | 1/A/875:876, 1/A/898:900 | Single bulged A | geometric IL_5TBW_024 NA | |
| IL_1VX6_033 | 1/A/880:881, 1/A/892:894 | Single bulged U | geometric IL_4WF9_088 IL_89505.1 | |
| IL_1VX6_034 | 1/A/922:924, 1/A/1057:1059 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_10289.1 | |
| IL_1VX6_035 | 1/A/924:928, 1/A/1050:1057 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_1VX6_036 | 1/A/947:948, 1/A/1014:1016 | Single bulged A | geometric IL_7A0S_016 IL_31462.3 | |
| IL_1VX6_037 | 1/A/952:953, 1/A/978:980 | Single bulged G | geometric IL_4WF9_023 IL_00225.9 | |
| IL_1VX6_038 | 1/A/953:957, 1/A/974:978 | Triple sheared | geometric IL_4V9F_027 IL_50730.1 | |
| IL_1VX6_039 | 1/A/988:991, 1/A/1007:1009 | Major groove platform with extra cWW | geometric IL_5TBW_031 NA | |
| IL_1VX6_040 | 1/A/992:994, 1/A/1005:1006 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_1VX6_041 | 1/A/1026:1028, 1/A/1038:1042 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_1VX6_042 | 1/A/1088:1089, 1/A/1239:1241 | Single stack bend | geometric IL_5TBW_035 NA | |
| IL_1VX6_043 | 1/A/1095:1104, 1/A/1228:1233 | No text annotation | ||
| IL_1VX6_044 | 1/A/1105:1107, 1/A/1226:1227 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_1VX6_045 | 1/A/1113:1119, 1/A/1175:1181 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_1VX6_046 | 1/A/1119:1120, 1/A/1173:1175 | Minor groove platform | geometric IL_4LFB_038 IL_92540.1 | |
| IL_1VX6_047 | 1/A/1121:1126, 1/A/1169:1172 | C-loop | geometric IL_5TBW_040 NA | |
| IL_1VX6_048 | 1/A/1128:1131, 1/A/1164:1167 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_1VX6_049 | 1/A/1131:1133, 1/A/1162:1164 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_1VX6_052 | 1/A/1191:1193, 1/A/1214:1216 | No text annotation | geometric IL_2ZNI_001 NA | |
| IL_1VX6_053 | 1/A/1198:1200, 1/A/1208:1209 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_1VX6_054 | 1/A/1248:1250, 1/A/1264:1266 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
| IL_1VX6_056 | 1/A/1294:1299, 1/A/1456:1461 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_49767.8 | |
| IL_1VX6_057 | 1/A/1301:1308, 1/A/1453:1454 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_1VX6_058 | 1/A/1308:1310, 1/A/1452:1453 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_1VX6_059 | 1/A/1315:1322, 1/A/1442:1447 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_1VX6_060 | 1/A/1322:1333, 1/A/1427:1442 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_1VX6_061 | 1/A/1335:1337, 1/A/1424:1425 | Single bulged U | geometric IL_5TBW_053 NA | |
| IL_1VX6_063 | 1/A/1525:1527, 1/A/1577:1580 | Isolated cWS basepair | geometric IL_4V9F_046 IL_42997.1 | |
| IL_1VX6_064 | 1/A/1530:1534, 1/A/1569:1574 | No text annotation | ||
| IL_1VX6_065 | 1/A/1536:1543, 1/A/1563:1567 | Kink-turn | geometric IL_4V9F_048 IL_70923.7 | |
| IL_1VX6_066 | 1/A/1548:1550, 1/A/1557:1558 | Single bulged U | geometric IL_5J7L_334 IL_89505.1 | |
| IL_1VX6_067 | 1/A/1593:1599, 1/A/2647:2652 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5TBW_061 NA | |
| IL_1VX6_069 | 1/A/1681:1685, 1/A/1728:1733 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_1VX6_071 | 1/A/1768:1770, 1/A/2082:2084 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_10289.1 | |
| IL_1VX6_072 | 1/A/1800:1804, 1/A/2028:2032 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_1VX6_073 | 1/A/1816:1818, 1/A/2008:2010 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_10289.1 | |
| IL_1VX6_075 | 1/A/1823:1824, 1/A/2001:2003 | Major groove platform | geometric IL_7A0S_088 IL_07039.1 | |
| IL_1VX6_076 | 1/A/1826:1829, 1/A/1996:1999 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_1VX6_077 | 1/A/1849:1853, 1/A/1967:1972 | No text annotation | geometric IL_5TBW_071 NA | |
| IL_1VX6_078 | 1/A/1861:1863, 1/A/1895:1897 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_10289.1 | |
| IL_1VX6_079 | 1/A/1868:1874, 1/A/1884:1890 | Kink-turn | geometric IL_5TBW_073 NA | |
| IL_1VX6_080 | 1/A/1906:1910, 1/A/1959:1963 | No text annotation | ||
| IL_1VX6_082 | 1/A/2036:2040, 1/A/2069:2073 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_1VX6_083 | 1/A/2151:2156, 1/A/2640:2642 | No text annotation | geometric IL_4V9F_059 IL_12566.4 | |
| IL_1VX6_084 | 1/A/2163:2165, 1/A/2631:2633 | Isolated tWW turn | geometric IL_4V9F_060 IL_67095.1 | |
| IL_1VX6_085 | 1/A/2166:2169, 1/A/2629:2630 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_1VX6_086 | 1/A/2169:2174, 1/A/2626:2629 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_1VX6_087 | 1/A/2186:2191, 1/A/2196:2202 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_48283.1 | |
| IL_1VX6_088 | 1/A/2208:2210, 1/A/2399:2401 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_10289.1 | |
| IL_1VX6_089 | 1/A/2215:2216, 1/A/2391:2394 | No text annotation | ||
| IL_1VX6_090 | 1/A/2421:2422, 1/A/2616:2618 | Single bulged A | geometric IL_5J7L_312 IL_31462.3 | |
| IL_1VX6_091 | 1/A/2449:2455, 1/A/2466:2473 | Kink-turn related | geometric IL_5TBW_083 NA | |
| IL_1VX6_092 | 1/A/2489:2492, 1/A/2538:2539 | Major groove intercalation | geometric IL_5TBW_084 NA | |
| IL_1VX6_093 | 1/A/2493:2494, 1/A/2534:2537 | Major groove intercalation | geometric IL_4V9F_067 IL_82107.2 | |
| IL_1VX6_094 | 1/A/2497:2503, 1/A/2528:2531 | No text annotation | ||
| IL_1VX6_095 | 1/A/2504:2509, 1/A/2522:2527 | No text annotation | ||
| IL_1VX6_096 | 1/A/2569:2570, 1/A/2600:2603 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_1VX6_097 | 1/A/2570:2581, 1/A/2597:2600 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_1VX6_098 | 1/A/2684:2687, 1/A/3345:3347 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_1VX6_099 | 1/A/2689:2691, 1/A/3340:3343 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_1VX6_100 | 1/A/2702:2704, 1/A/3170:3171 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_1VX6_101 | 1/A/2705:2706, 1/A/3166:3169 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_1VX6_102 | 1/A/2716:2718, 1/A/2943:2946 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 IL_85599.1 | |
| IL_1VX6_103 | 1/A/2738:2739, 1/A/2809:2811 | No text annotation | ||
| IL_1VX6_104 | 1/A/2829:2835, 1/A/2918:2926 | No text annotation | ||
| IL_1VX6_105 | 1/A/2953:2954, 1/A/2964:2966 | Multiple bulged bases | geometric IL_1R3E_002 IL_82107.2 | |
| IL_1VX6_106 | 1/A/3005:3007, 1/A/3025:3029 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_1VX6_107 | 1/A/3109:3113, 1/A/3145:3147 | No text annotation | geometric IL_4V84_070 NA | |
| IL_1VX6_108 | 1/A/3115:3124, 1/A/3136:3143 | No text annotation | ||
| IL_1VX6_109 | 1/A/3182:3183, 1/A/3224:3226 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_1VX6_110 | 1/A/3183:3185, 1/A/3222:3224 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_1VX6_111 | 1/A/3185:3187, 1/A/3221:3222 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_1VX6_112 | 1/A/3187:3189, 1/A/3217:3221 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_1VX6_113 | 1/A/3194:3198, 1/A/3208:3212 | Triple sheared | geometric IL_5J7L_338 IL_17948.1 | |
| IL_1VX6_114 | 1/A/3235:3236, 1/A/3308:3310 | Major groove platform | geometric IL_4WF9_094 IL_07039.1 | |
| IL_1VX6_115 | 1/A/3238:3240, 1/A/3302:3306 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_1VX6_116 | 1/A/3240:3241, 1/A/3299:3302 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_1VX6_117 | 1/A/3250:3251, 1/A/3268:3271 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_1VX6_118 | 1/A/3277:3279, 1/A/3285:3287 | Isolated non-canonical cWW pair | geometric IL_5Y7M_007 IL_10289.1 | |
| IL_1VX6_119 | 1/A/3319:3320, 1/A/3329:3331 | Single bulged A | geometric IL_5TBW_113 NA | |
| IL_1VX6_120 | 1/A/3360:3362, 1/A/3376:3379 | No text annotation | ||
| IL_1VX6_121 | 1/A/3390:3393, 1/A/3524:3530 | Double sheared | geometric IL_4V88_396 NA | |
| IL_1VX6_122 | 1/A/3398:3400, 1/A/3426:3428 | Isolated non-canonical cWW pair | geometric IL_4P3T_006 IL_10289.1 | |
| IL_1VX6_123 | 1/A/3405:3411, 1/A/3416:3421 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_019 IL_16458.4 | |
| IL_1VX6_124 | 1/A/3433:3437, 1/A/3476:3478 | Major groove minor groove platform with tHH | geometric IL_5TBW_117 NA | |
| IL_1VX6_125 | 1/A/3440:3444, 1/A/3469:3473 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_1VX6_126 | 1/A/3448:3449, 1/A/3462:3465 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.1 | |
| IL_1VX6_127 | 1/A/3486:3491, 1/A/3512:3517 | UAA/GAN with extra cWW | geometric IL_7RQB_107 NA | |
| IL_1VX6_129 | 1/A/3580:3582, 1/A/3620:3621 | Single bulged A | geometric IL_4R4V_004 IL_31462.3 | |
| IL_1VX6_130 | 1/A/3583:3591, 1/A/3613:3619 | No text annotation | ||
| IL_1VX6_133 | 1/A/3694:3697, 1/A/3705:3708 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_1VX6_134 | 1/A/3714:3716, 1/A/3775:3777 | Isolated non-canonical cWW pair | geometric IL_6E7L_001 IL_10289.1 | |
| IL_1VX6_135 | 1/A/3716:3717, 1/A/3773:3775 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_1VX6_137 | 1/A/3724:3729, 1/A/3759:3763 | No text annotation | geometric IL_5TBW_133 NA | |
| IL_1VX6_138 | 1/A/3731:3733, 1/A/3756:3757 | Single bulged U | geometric IL_3MEI_001 IL_89505.1 | |
| IL_1VX6_139 | 1/A/3734:3737, 1/A/3752:3755 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_1VX6_140 | 1/B/15:16, 1/B/62:64 | Single bulged A | geometric IL_5TBW_372 NA | |
| IL_1VX6_141 | 1/B/21:27, 1/B/52:57 | No text annotation | ||
| IL_1VX6_142 | 1/B/28:29, 1/B/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_7RQB_113 NA | |
| IL_1VX6_143 | 1/B/32:36, 1/B/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_1VX6_144 | 1/B/71:78, 1/B/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.9 | |
| IL_1VX6_145 | 1/B/82:85, 1/B/92:94 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.3 | |
| IL_1VX6_146 | 1/C/48:68, 1/C/99:103 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_1VX6_147 | 1/C/68:70, 1/C/96:99 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_1VX6_148 | 1/C/73:76, 1/C/83:93 | No text annotation | ||
| IL_1VX6_149 | 1/C/122:123, 1/C/138:141 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1VX6_007 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_1VX6_023 | Triple non-canonical cWW pairs | ||
| IL_1VX6_050 | Other IL | ||
| IL_1VX6_062 | No text annotation | ||
| IL_1VX6_068 | No text annotation | ||
| IL_1VX6_070 | No text annotation | ||
| IL_1VX6_128 | Multiple bulged bases | ||
| IL_1VX6_131 | No text annotation | ||
| IL_1VX6_136 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1VX6_001 | 1/A/113:117, 1/A/160:163, 1/A/268:274 | No text annotation | ||
| J3_1VX6_002 | 1/A/446:454, 1/A/501:506, 1/A/692:701 | No text annotation | ||
| J3_1VX6_003 | 1/A/512:514, 1/A/641:653, 1/A/680:686 | No text annotation | ||
| J3_1VX6_004 | 1/A/540:548, 1/A/580:582, 1/A/608:612 | No text annotation | ||
| J3_1VX6_005 | 1/A/933:939, 1/A/1024:1026, 1/A/1042:1045 | No text annotation | geometric J3_8C3A_003 NA | |
| J3_1VX6_006 | 1/A/948:950, 1/A/982:987, 1/A/1010:1014 | No text annotation | ||
| J3_1VX6_007 | 1/A/1628:1634, 1/A/2124:2126, 1/A/2138:2141 | No text annotation | geometric J3_5TBW_008 NA | |
| J3_1VX6_008 | 1/A/1637:1640, 1/A/2104:2110, 1/A/2119:2121 | No text annotation | geometric J3_8C3A_007 NA | |
| J3_1VX6_009 | 1/A/1688:1691, 1/A/1700:1710, 1/A/1723:1725 | No text annotation | ||
| J3_1VX6_011 | 1/A/1854:1860, 1/A/1898:1905, 1/A/1964:1966 | No text annotation | ||
| J3_1VX6_012 | 1/A/2725:2728, 1/A/2821:2825, 1/A/2930:2936 | No text annotation | geometric J3_4V9F_007 NA | |
| J3_1VX6_013 | 1/A/2990:2992, 1/A/3093:3104, 1/A/3152:3157 | No text annotation | geometric J3_8C3A_056 NA | |
| J3_1VX6_014 | 1/A/3003:3005, 1/A/3029:3031, 1/A/3040:3045 | No text annotation | geometric J3_5TBW_013 NA | |
| J3_1VX6_015 | 1/A/3245:3248, 1/A/3273:3275, 1/A/3289:3295 | No text annotation | geometric J3_5TBW_014 NA | |
| J3_1VX6_016 | 1/A/3691:3693, 1/A/3709:3712, 1/A/3779:3783 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1VX6_010 | No text annotation |
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