HL_1VX6_009

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUACAUUUC

Length

10 nucleotides

Bulged bases

1VX6|1|A|A|312, 1VX6|1|A|U|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91226.7

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

23

Unit IDs

1VX6|1|A|G|311
1VX6|1|A|A|312
1VX6|1|A|U|313
1VX6|1|A|A|314
1VX6|1|A|C|315
1VX6|1|A|A|316
1VX6|1|A|U|317
1VX6|1|A|U|318
1VX6|1|A|U|319
1VX6|1|A|C|320

Current chains

Chain A

28S ribosomal RNA

Nearby chains