HL_1VX6_049

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

1VX6|1|A|A|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99908.5

Basepair signature

cWW-cSH-tHW-R-R-R

Number of instances in this motif group

7

Unit IDs

1VX6|1|A|G|2546
1VX6|1|A|U|2547
1VX6|1|A|A|2548
1VX6|1|A|A|2549
1VX6|1|A|C|2550
1VX6|1|A|U|2551
1VX6|1|A|A|2552
1VX6|1|A|U|2553
1VX6|1|A|G|2554
1VX6|1|A|A|2555
1VX6|1|A|C|2556

Current chains

Chain A

28S ribosomal RNA

Nearby chains