HL_1VX6_055

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAAUAUUAACG

Length

13 nucleotides

Bulged bases

1VX6|1|A|A|2976, 1VX6|1|A|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41833.7

Basepair signature

cWW-tSH-tHH-tWW-R-R-R

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|U|2972
1VX6|1|A|U|2973
1VX6|1|A|A|2974
1VX6|1|A|A|2975
1VX6|1|A|A|2976
1VX6|1|A|U|2977
1VX6|1|A|A|2978
1VX6|1|A|U|2979
1VX6|1|A|U|2980
1VX6|1|A|A|2981
1VX6|1|A|A|2982
1VX6|1|A|C|2983
1VX6|1|A|G|2984

Current chains

Chain A

28S ribosomal RNA

Nearby chains