HL_1VX6_067

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUUAAG

Length

16 nucleotides

Bulged bases

1VX6|1|A|G|3500, 1VX6|1|A|C|3504, 1VX6|1|A|U|3506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70420.7

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-R-R

Number of instances in this motif group

10

Unit IDs

1VX6|1|A|C|3494
1VX6|1|A|U|3495
1VX6|1|A|G|3496
1VX6|1|A|A|3497
1VX6|1|A|A|3498
1VX6|1|A|C|3499
1VX6|1|A|G|3500
1VX6|1|A|C|3501
1VX6|1|A|C|3502
1VX6|1|A|U|3503
1VX6|1|A|C|3504
1VX6|1|A|U|3505
1VX6|1|A|U|3506
1VX6|1|A|A|3507
1VX6|1|A|A|3508
1VX6|1|A|G|3509

Current chains

Chain A

28S ribosomal RNA

Nearby chains