HL_1VY4_006

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

1VY4|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0994

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1VY4|1|AA|G|259
1VY4|1|AA|G|260
1VY4|1|AA|U|261
1VY4|1|AA|A|262
1VY4|1|AA|A|263
1VY4|1|AA|U|264
1VY4|1|AA|G|265
1VY4|1|AA|G|266
1VY4|1|AA|C|267

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20