HL_1VY4_037
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 1VY4|1|AX|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY4_037 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.062
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
1VY4|1|AX|G|31
1VY4|1|AX|5MC|32
1VY4|1|AX|U|33
1VY4|1|AX|C|34
1VY4|1|AX|A|35
1VY4|1|AX|U|36
1VY4|1|AX|A|37
1VY4|1|AX|A|38
1VY4|1|AX|C|39
Current chains
- Chain AX
- P-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AM
- 30S ribosomal protein S13
- Chain AV
- mRNA
- Chain AY
- Transfer RNA; tRNA
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