3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGGAUG
Length
6 nucleotides
Bulged bases
1VY4|1|BA|G|2206, 1VY4|1|BA|G|2207, 1VY4|1|BA|U|2218
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VY4_091 not in the Motif Atlas
Homologous match to HL_7RQB_052
Geometric discrepancy: 0.2542
The information below is about HL_7RQB_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_98426.1
Basepair signature
cWW-F
Number of instances in this motif group
6

Unit IDs

1VY4|1|BA|C|2205
1VY4|1|BA|G|2206
1VY4|1|BA|G|2207
1VY4|1|BA|A|2208
1VY4|1|BA|U|2218
1VY4|1|BA|G|2219

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B1
50S ribosomal protein L28
Chain BD
50S ribosomal protein L2
Chain BI
50S ribosomal protein L9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1697 s