HL_1VY4_091
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGAUG
- Length
- 6 nucleotides
- Bulged bases
- 1VY4|1|BA|G|2206, 1VY4|1|BA|G|2207, 1VY4|1|BA|U|2218
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY4_091 not in the Motif Atlas
- Homologous match to HL_7RQB_052
- Geometric discrepancy: 0.2542
- The information below is about HL_7RQB_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 6
Unit IDs
1VY4|1|BA|C|2205
1VY4|1|BA|G|2206
1VY4|1|BA|G|2207
1VY4|1|BA|A|2208
1VY4|1|BA|U|2218
1VY4|1|BA|G|2219
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B1
- 50S ribosomal protein L28
- Chain BD
- 50S ribosomal protein L2
- Chain BI
- 50S ribosomal protein L9
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