HL_1VY4_139
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 1VY4|1|CA|C|1363, 1VY4|1|CA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY4_139 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1203
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1VY4|1|CA|G|1356
1VY4|1|CA|A|1357
1VY4|1|CA|U|1358
1VY4|1|CA|C|1359
1VY4|1|CA|A|1360
1VY4|1|CA|G|1361
1VY4|1|CA|C|1362
1VY4|1|CA|C|1363
1VY4|1|CA|A|1363|||A
1VY4|1|CA|U|1364
1VY4|1|CA|G|1365
1VY4|1|CA|C|1366
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CM
- 30S ribosomal protein S13
- Chain CN
- 30S ribosomal protein S14 type Z
- Chain CU
- 30S ribosomal protein Thx
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