HL_1VY4_182

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1VY4|1|DA|G|1325, 1VY4|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_182 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0605

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

1VY4|1|DA|G|1324
1VY4|1|DA|G|1325
1VY4|1|DA|U|1326
1VY4|1|DA|C|1327
1VY4|1|DA|G|1328
1VY4|1|DA|U|1329
1VY4|1|DA|C|1330

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22