HL_1VY4_199
3D structure
- PDB id
- 1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 1VY4|1|DA|A|2030, 1VY4|1|DA|A|2031, 1VY4|1|DA|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY4_199 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.0726
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1VY4|1|DA|G|2027
1VY4|1|DA|U|2028
1VY4|1|DA|G|2029
1VY4|1|DA|A|2030
1VY4|1|DA|A|2031
1VY4|1|DA|G|2032
1VY4|1|DA|A|2033
1VY4|1|DA|U|2034
1VY4|1|DA|G|2035
1VY4|1|DA|C|2036
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D5
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L3
- Chain DV
- 50S ribosomal protein L21
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