HL_1VY5_134

3D structure

PDB id

1VY5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY5_134 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.1235

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1VY5|1|CA|C|1076
1VY5|1|CA|G|1077
1VY5|1|CA|U|1078
1VY5|1|CA|G|1079
1VY5|1|CA|A|1080
1VY5|1|CA|G|1081

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5