3D structure

PDB id
1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGAUAACG
Length
8 nucleotides
Bulged bases
1VY6|1|BA|U|958, 1VY6|1|BA|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VY6_062 not in the Motif Atlas
Homologous match to HL_7RQB_027
Geometric discrepancy: 0.0931
The information below is about HL_7RQB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_35490.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
299

Unit IDs

1VY6|1|BA|C|955
1VY6|1|BA|G|956
1VY6|1|BA|A|957
1VY6|1|BA|U|958
1VY6|1|BA|A|959
1VY6|1|BA|A|960
1VY6|1|BA|C|961
1VY6|1|BA|G|962

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain BQ
50S ribosomal protein L16

Coloring options:


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