HL_1VY6_067

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_067 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0756

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

1VY6|1|BA|G|1281
1VY6|1|BA|U|1282
1VY6|1|BA|G|1283
1VY6|1|BA|A|1284
1VY6|1|BA|G|1285
1VY6|1|BA|A|1286
1VY6|1|BA|A|1287
1VY6|1|BA|U|1288
1VY6|1|BA|C|1289

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BW

50S ribosomal protein L22