#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 5 6 71-72-6
1 HL_4WF9_0194WF90.52862Other HLXC654A655G656U657A659U661G662cWW
2 HL_6CZR_1006CZR0.60503T-loop with 3 stacked bulged bases1aC1296U1297G1298C1299A1300A1301G1305cWWntWH
3 HL_4LFB_0294LFB0.61063T-loop with 3 stacked bulged basesAC1314U1315G1316C1317A1318A1319G1323cWWtWH
4 HL_5J7L_0285J7L0.61423T-loop with 3 stacked bulged basesAAC1314U1315G1316C1317A1318A1319G1323cWWtWH
5 HL_2A64_0022A640.39861T-loop with 2 stacked bulged basesAC69U70G71A72G73A74G76cWWtWH
6 HL_4WF9_0104WF90.29511T-loop with 2 stacked bulged basesXC348U349G350G351A352A353G355cWWtWH
7 HL_7RQB_0107RQB0.24531T-loop with 1 bulged base (H)1AU305U306G307G308G309A310G312cWWtWH
8 HL_5T5A_0015T5A0.34212T-loop with 2 stacked bulged basesAG21U22G23C24A25A26C29cWWtWH
9 HL_7A0S_0107A0S0.20781T-loop with 1 bulged baseXC316U317G318G319A320A321G323cWWtWH
10 HL_5J7L_1425J7L0.21341T-loop with 2 stacked bulged basesDAC305U306G307G308A309A310G312cWWtWH
11 HL_5DH6_0025DH60.24081T-loop with 2 stacked bulged basesAC27U28G29G30G31A32G34cWWtWH
12 HL_5Y85_0035Y850.28522T-loop with 2 stacked bulged basesDG11U12G13C14A15A16C19cWWtWH
13 HL_4FRN_0054FRN0.19132T-loop with 2 bulged bases not stackedBG28U29G30U31A32A33C36cWWtWH
14 HL_4V9F_0344V9F0.41472T-loop with 2 stacked bulged bases0G1387U1388G1389A1390G1391A1392C1395cWWtWH
15 HL_7A0S_0327A0S0.35642T-loop with 2 stacked bulged basesXG1294U1295G1296A1297G1298A1299C1302cWWtWH
16 HL_7RQB_0337RQB0.33372T-loop with 2 stacked bulged bases (H)1AG1281U1282G1283A1284G1285A1286C1289cWWtWH
17 HL_4WF9_0324WF90.36692T-loop with 2 stacked bulged basesXG1318U1319G1320A1321G1322A1323C1326cWWtWH
18 HL_8C3A_0318C3A0.35082T-loop with 2 stacked bulged bases1A1458U1459G1460A1461G1462A1463U1466cWWtWH
19 HL_5TBW_0315TBW0.33692T-loop with 2 stacked bulged bases1A1462U1463G1464A1465G1466A1467U1470cWWtWH
20 HL_5J7L_1655J7L0.29232T-loop with 2 stacked bulged basesDAG1281U1282G1283A1284A1285A1286C1289cWWtWH
21 HL_6UFG_0086UFG0.20752T-loop with 2 stacked bulged basesBG54U55U56C57A58A59C62cWWtWH
22 HL_3ICQ_0053ICQ0.20252T-loop with 2 stacked bulged basesEG53U54U55C56G57A58C61cWWtWH
23 HL_4V8Q_1104V8Q0.21822T-loop with 2 stacked bulged basesBYG66U67U68C69G70A71C74cWWntWH
24 HL_8SP9_0048SP90.25442T-loop with 2 stacked bulged basesCG130U131U132C133A134A135C138cWWntWH
25 HL_3AKZ_0123AKZ0.20222T-loop with 2 stacked bulged basesEG53U54U55C56G57A58C61cWWtWH
26 HL_3EPH_0033EPH0.17202T-loop with 2 stacked bulged basesEG53U54U55C56G57A58C61cWWtWH
27 HL_1N78_0031N780.15732T-loop with 2 stacked bulged basesCG553U554U555C556G557A558C561cWWtWH
28 HL_3TUP_0033TUP0.15682T-loop with 2 stacked bulged basesTG53U54U55C56G57A58C61cWWntWH
29 HL_4QEI_0034QEI0.19082T-loop with 2 stacked bulged basesCG53U54U55C56G57A58C61cWW
30 HL_5E6M_0035E6M0.17412T-loop with 2 stacked bulged basesCG53U54U55C56G57A58C61cWW
31 HL_3AM1_0043AM10.16132T-loop with 2 stacked bulged basesBG59U60U61C62G63A64C67cWWtWH
32 HL_3FOZ_0063FOZ0.13092T-loop with 2 stacked bulged basesDG53U54U55C56G57A58C61cWWtWH
33 HL_2DER_0062DER0.14242T-loop with 2 stacked bulged basesDG53U54U55C56G57A58C61cWWtWH
34 HL_2DU3_0032DU30.10072T-loop with 2 stacked bulged basesDG952U953U954C955G956A957C960cWWtWH
35 HL_4X4V_0014X4V0.11532T-loop with 2 stacked bulged basesBG12U13U14C15G16A17C20cWWtWH
36 HL_4MGN_0044MGN0.09072T-loop with 2 stacked bulged basesBG52U53U54C55G56A57C60cWWtWH
37 HL_3ADD_0043ADD0.09472T-loop with 2 stacked bulged basesCG53U54U55C56A57A58C61cWWtWH
38 HL_3W3S_0043W3S0.09032T-loop with 2 stacked bulged basesBG53U54U55C56G57A58C61cWWtWH
39 HL_3RG5_0083RG50.09342T-loop with 2 stacked bulged basesBG53U54U55C56A57A58C61cWWtWH
40 HL_6JXM_0036JXM0.10042T-loop with 2 stacked bulged basesBG74U75U76C77G78A79C82cWWtWH
41 HL_8G9Z_0048G9Z0.10362T-loop with 2 stacked bulged basesEG53||AU54||AU55||AC56||AA57||AA58||AC61||AcWWtWH
42 HL_4LCK_0034LCK0.00002T-loop with 2 stacked bulged basesBG52U53U54C55G56A57C60cWWtWH
43 HL_3ZGZ_0033ZGZ0.07612T-loop with 2 stacked bulged basesBG53U54U55C56A57A58C61cWWtWH
44 HL_4P5J_0034P5J0.12702T-loop with 2 stacked bulged basesAG46U47G48C49A50A51C54cWWtWH
45 HL_5WT1_0035WT10.13412T-loop with 2 stacked bulged basesCG53U54U55C56A57A58C61cWWtWH
46 HL_8V1I_0068V1I0.09462T-loop with 2 stacked bulged basesBG38U39U40C41A42A43C46cWWtWH
47 HL_5WWT_0025WWT0.09942T-loop with 2 stacked bulged basesCG53U54U55C56A57A58C61cWWtWH
48 HL_3IGI_0013IGI0.13512T-loop with 2 stacked bulged basesAG30U31G32A33G34A35C38cWWtWH
49 HL_6JQ5_0036JQ50.17852T-loop with 2 stacked bulged basesBG6U7G8A9G10A11C14cWWtWH
50 HL_6JQ5_0016JQ50.17902T-loop with 2 stacked bulged basesAG6U7G8A9G10A11C14cWWtWH
51 HL_6JQ6_0036JQ60.17012T-loop with 2 stacked bulged basesUG6U7G8A9G10A11C14cWWtWH
52 HL_4GXY_0024GXY0.27272T-loop with 2 stacked bulged basesAG49U50G51C52A53A54C57cWWtWH
53 HL_5TBW_0055TBW0.26141T-loop with 2 stacked bulged bases1U194U195G196G197A198A199A201cWWtWH
54 HL_8C3A_0058C3A0.24171T-loop with 2 stacked bulged bases1U193U194G195G196A197A198A200cWWtWH
55 HL_4V9F_0104V9F0.20721T-loop with 2 stacked bulged bases0U312U313G314G315A316A317A319cWWtWH
56 HL_6MJ0_0096MJ00.20232T-loop with 2 stacked bulged basesBG66U67G68C69A70A71C74cWWtWH
57 HL_4FRG_0014FRG0.24372T-loop with 2 bulged bases not stackedBG28U29G30A31A32A33C36cWWtWH
58 HL_3F2X_0043F2X0.23312T-loop with 2 bulged bases not stackedXG68U69G70A71A72A73C76cWWtWH
59 HL_6DN2_0036DN20.23902T-loop with 2 bulged bases not stackedYG68U69G70A71A72A73C76cWWtWH
60 HL_5C45_0035C450.23482T-loop with 2 bulged bases not stackedYG68U69G70A71A72A73C76cWWtWH
61 HL_6DN2_0016DN20.22872T-loop with 2 bulged bases not stackedXG17U18G19A20A21A22C25cWWtWH
62 HL_3F2X_0013F2X0.20082T-loop with 2 bulged bases not stackedXG17U18G19A20A21A22C25cWWtWH
63 HL_5C45_0015C450.22662T-loop with 2 bulged bases not stackedXG17U18G19A20A21A22C25cWWtWH
64 HL_4WF9_0184WF90.35053T-loop with 2 stacked bulged basesXU609U610U611U612G613U614A618cWW
65 HL_5J7L_1505J7L0.34083T-loop with 2 stacked bulged basesDAU566U567U568U569G570U571A575cWW
66 HL_7RQB_0187RQB0.38203T-loop with 2 stacked bulged bases (H)1AU566A567U568U569G570A571A575cWW
67 HL_7A0S_0187A0S0.37053T-loop with 2 stacked bulged basesXU575A576U577U578G579A580A584cWW
68 HL_8C3A_0148C3A0.34433T-loop with 2 stacked bulged bases1U638C639U640U641G642A643A647cWW
69 HL_5TBW_0145TBW0.36223T-loop with 2 stacked bulged bases1U640C641U642U643G644A645A649cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCGAUUC7
GUGAAAUUC7
GUGAGAAUC6
GUUCGAGUC4
CUGGAAAG3
GUUCAAGUC3
GUUCGAAUC3
GUUCAAUUC3
GUUCAAAUC3
CUGCAACCCG2
GUGCAAGUC2
AUGAGAACU2
GUUCGAUCC2
GUGCAACUC2
UUGGAACA2
UAUUGAAGCA2
UCUUGAAACA2
CAGUAAAUG1
CUGCAACUCG1
CUGAGAUG1
UUGGGAAG1
GUGCAAGCC1
CUGGGAUG1
GUGUAAUUC1
GUGAGAACC1
GUGAAAAGC1
GUUCGACUC1
GUGAGAGUC1
UUGGAAUA1
UUUUGUAGAA1
UUUUGUAUAA1
Non-Watson-Crick part of the motif
SequenceCounts
UUCGAUU7
UGAAAUU7
UGAGAAU6
UUCGAGU4
UGGAAA3
UGAGAAC3
UUCAAGU3
UUCGAAU3
UUCAAUU3
UUCAAAU3
UGCAACCC2
UGCAAGU2
UUCGAUC2
UGCAACU2
UGGAAC2
AUUGAAGC2
CUUGAAAC2
AGUAAAU1
UGCAACUC1
UGAGAU1
UGGGAA1
UGCAAGC1
UGGGAU1
UGUAAUU1
UGAAAAG1
UUCGACU1
UGAGAGU1
UGGAAU1
UUUGUAGA1
UUUGUAUA1

Release history

Release3.86
Date2024-07-17
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop with 2 stacked bulged bases (53)
  • T-loop with 2 bulged bases not stacked (8)
  • T-loop with 3 stacked bulged bases (3)
  • T-loop with 2 stacked bulged bases (H) (2)
  • Other HL (1)
  • T-loop with 1 bulged base (1)
  • T-loop with 1 bulged base (H) (1)
  • Basepair signature
    cWW-tWH-F-F-F
    Heat map statistics
    Min 0.05 | Avg 0.29 | Max 0.83
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