HL_1VY6_082
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 1VY6|1|BA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY6_082 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1584
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
1VY6|1|BA|G|1910
1VY6|1|BA|U|1911
1VY6|1|BA|A|1912
1VY6|1|BA|A|1913
1VY6|1|BA|C|1914
1VY6|1|BA|U|1915
1VY6|1|BA|A|1916
1VY6|1|BA|U|1917
1VY6|1|BA|A|1918
1VY6|1|BA|A|1919
1VY6|1|BA|C|1920
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- mRNA
- Chain AX
- Transfer RNA; tRNA
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