HL_1VY6_096

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_096 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1021

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1VY6|1|BA|C|2551
1VY6|1|BA|U|2552
1VY6|1|BA|G|2553
1VY6|1|BA|U|2554
1VY6|1|BA|U|2555
1VY6|1|BA|C|2556
1VY6|1|BA|G|2557

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AW

Cytidine-Puromycin