HL_1VY6_110

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

1VY6|1|CA|U|202, 1VY6|1|CA|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_110 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.269

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

1VY6|1|CA|G|200
1VY6|1|CA|C|201
1VY6|1|CA|U|202
1VY6|1|CA|U|203
1VY6|1|CA|U|204
1VY6|1|CA|G|216
1VY6|1|CA|C|217

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains