Motif HL_34168.3 Version HL_34168.3 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | 2-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ANG_001 | 4ANG | 0.8881 | 2 | R | RNA (20-mer) | G | 7||A||P_1 | G | 8||A||P_1 | A | 9||A||P_1 | C | 14||A||P_1 | C | 15||A||P_1 | cWW | ncWW | ||
| 2 | HL_1A9N_001 | 1A9N | 0.6412 | 10 | Q | RNA (24-mer) | G | 4 | U | 5 | A | 6 | U | 17 | C | 18 | cWW | cwW | ||
| 3 | HL_5TBW_018 | 5TBW | 0.4391 | 1 | 1 | LSU rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW | ||
| 4 | HL_8C3A_018 | 8C3A | 0.4020 | 1 | 1 | LSU rRNA | G | 759 | U | 760 | U | 762 | U | 763 | C | 764 | cWW | cwW | ||
| 5 | HL_4QEI_002 | 4QEI | 0.0000 | 4 | C | tRNA | A | 31 | U | 32 | U | 33 | U | 38 | U | 39 | cWW | cwW | ||
| 6 | HL_5E6M_002 | 5E6M | 0.1151 | 4 | C | tRNA | A | 31 | U | 32 | U | 33 | U | 38 | U | 39 | cWW | cwW | ||
| 7 | HL_6N5P_001 | 6N5P | 0.5499 | 4 | A | cyclic di-AMP riboswitch | A | 14 | U | 15 | G | 16 | U | 21 | U | 22 | cWW | cwW | ||
| 8 | HL_8VTW_008 | 8VTW | 0.5028 | 2 | Single bulged U (H) | 1A | LSU rRNA | G | 271|||I | C | 271|||J | U | 271|||L | G | 271|||M | C | 271|||O | cWW | ncWW | |
| 9 | HL_5J7L_018 | 5J7L | 0.4272 | 2 | AA | SSU rRNA | C | 840 | C | 841 | U | 843 | A | 845 | G | 846 | cWW | cWW | ||
| 10 | HL_5J7L_200 | 5J7L | 0.4652 | 2 | Other HL | DA | LSU rRNA | C | 2795 | U | 2796 | U | 2798 | A | 2799 | G | 2801 | cWW | ncWW | |
| 11 | HL_6CZR_076 | 6CZR | 0.5389 | 2 | 1a | SSU rRNA | G | 207 | C | 208 | U | 210 | G | 212 | C | 213 | cWW | ncWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCCCAUU | 2 |
| GGAGACC | 1 |
| GUAUUGCAGUACCUC | 1 |
| GUCUUC | 1 |
| GUGUUC | 1 |
| AUGUCGUUU | 1 |
| GCUUGUC | 1 |
| CCUUGAG | 1 |
| CUUUAAG | 1 |
| GCUUUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCCCAU | 2 |
| GAGAC | 1 |
| UAUUGCAGUACCU | 1 |
| UCUU | 1 |
| UGUU | 1 |
| UGUCGUU | 1 |
| CUUGU | 1 |
| CUUGA | 1 |
| UUUAA | 1 |
| CUUUG | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Other HL (1)
- Single bulged U (H) (1)
- Basepair signature
- cWW-cWW-F
- Heat map statistics
- Min 0.12 | Avg 0.45 | Max 0.89
Coloring options: