HL_1VY6_194

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

1VY6|1|DA|A|2268, 1VY6|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_194 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0918

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1VY6|1|DA|C|2264
1VY6|1|DA|U|2265
1VY6|1|DA|A|2266
1VY6|1|DA|A|2267
1VY6|1|DA|A|2268
1VY6|1|DA|A|2269
1VY6|1|DA|G|2270
1VY6|1|DA|G|2271
1VY6|1|DA|U|2272
1VY6|1|DA|A|2273
1VY6|1|DA|A|2274
1VY6|1|DA|C|2275
1VY6|1|DA|G|2276

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L27

Chain DQ

50S ribosomal protein L16