HL_1VY6_218

3D structure

PDB id

1VY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

1VY6|1|CA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY6_218 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3391

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1VY6|1|CA|C|418
1VY6|1|CA|C|419
1VY6|1|CA|U|420
1VY6|1|CA|U|421
1VY6|1|CA|C|422
1VY6|1|CA|G|423
1VY6|1|CA|G|424
1VY6|1|CA|G|425

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4