Motif HL_56443.1 Version HL_56443.1 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_021 | 5TBW | 0.1021 | 2 | 1 | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |
| 2 | HL_8C3A_021 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | |
| 3 | HL_6CF2_001 | 6CF2 | 0.2308 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||
| 4 | HL_5H9F_001 | 5H9F | 0.6050 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWw | ||
| 5 | HL_6WZR_001 | 6WZR | 0.8819 | 1 | A | ZMP/ZTP riboswitch | G | 28 | A | 29 | A | 30 | U | 31 | A | 33 | A | 34 | C | 35 | cWW | |||
| 6 | HL_5BTP_003 | 5BTP | 0.8964 | 1 | B | ZMP/ZTP riboswitch | G | 28 | A | 29 | A | 30 | U | 31 | A | 33 | A | 34 | C | 35 | cWW | ncsS | ||
| 7 | HL_2OEU_002 | 2OEU | 0.7982 | 1 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | A | 28 | U | 30 | A | 31 | G | 32 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 2 |
| GAAUUAAC | 2 |
| ACUUCGGU | 1 |
| GCGCCAGC | 1 |
| CCAAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 2 |
| AAUUAA | 2 |
| CUUCGG | 1 |
| CGCCAG | 1 |
| CAAAUA | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.54 | Max 0.92
Coloring options: