HL_1VY6_220
3D structure
- PDB id
- 1VY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGGUAGCGGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY6_220 not in the Motif Atlas
- Homologous match to HL_7A0S_002
- Geometric discrepancy: 0.5388
- The information below is about HL_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50418.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
1VY6|1|DA|C|86
1VY6|1|DA|C|87
1VY6|1|DA|G|88
1VY6|1|DA|G|89
1VY6|1|DA|U|90
1VY6|1|DA|A|92
1VY6|1|DA|G|93
1VY6|1|DA|C|94
1VY6|1|DA|G|94|||A
1VY6|1|DA|G|95
1VY6|1|DA|G|96
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D2
- 50S ribosomal protein L29
- Chain DX
- 50S ribosomal protein L23
- Chain DY
- 50S ribosomal protein L24
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