HL_1VY7_046
3D structure
- PDB id
- 1VY7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 1VY7|1|BA|G|329
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VY7_046 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.0607
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
1VY7|1|BA|G|327
1VY7|1|BA|U|328
1VY7|1|BA|G|329
1VY7|1|BA|A|330
1VY7|1|BA|A|331
1VY7|1|BA|A|332
1VY7|1|BA|G|333
1VY7|1|BA|C|334
1VY7|1|BA|C|335
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain BF
- 50S ribosomal protein L4
- Chain BY
- 50S ribosomal protein L24
Coloring options: