1VY7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1VY7_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_1VY7_212 | 1/AA/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_1VY7_004 | 1/AA/189C:189H | No text annotation | homologous HL_6CZR_075 NA | |
| HL_1VY7_006 | 1/AA/259:267 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_1VY7_007 | 1/AA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_1VY7_008 | 1/AA/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_1VY7_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_1VY7_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_1VY7_012 | 1/AA/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_1VY7_013 | 1/AA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_1VY7_014 | 1/AA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_1VY7_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_1VY7_016 | 1/AA/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_1VY7_017 | 1/AA/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_1VY7_018 | 1/AA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_1VY7_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_1VY7_020 | 1/AA/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_1VY7_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_1VY7_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_1VY7_024 | 1/AA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_1VY7_025 | 1/AA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_1VY7_026 | 1/AA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_1VY7_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_1VY7_028 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_1VY7_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_1VY7_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_1VY7_031 | 1/AA/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_1VY7_032 | 1/AA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_1VY7_033 | 1/AX/13:22 | tRNA D-loop | homologous HL_6CFJ_106 HL_63054.1 | |
| HL_1VY7_034 | 1/AX/31:39 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_1VY7_035 | 1/AX/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 | |
| HL_1VY7_036 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_1VY7_037 | 1/BA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_1VY7_038 | 1/BA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_1VY7_039 | 1/BA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_1VY7_040 | 1/BA/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_1VY7_041 | 1/BA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_1VY7_042 | 1/BA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_1VY7_043 | 1/BA/271I:271O | No text annotation | geometric HL_5J7L_018 NA | |
| HL_1VY7_044 | 1/BA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_1VY7_045 | 1/BA/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_1VY7_046 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_1VY7_047 | 1/BA/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_1VY7_048 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_1VY7_049 | 1/BA/462:467 | GNRA | homologous HL_5J7L_147 NA | |
| HL_1VY7_050 | 1/BA/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_1VY7_052 | 1/BA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_1VY7_053 | 1/BA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_1VY7_054 | 1/BA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_1VY7_055 | 1/BA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_1VY7_057 | 1/BA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_1VY7_058 | 1/BA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_1VY7_059 | 1/BA/779:785 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_1VY7_060 | 1/BA/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_1VY7_061 | 1/BA/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_1VY7_062 | 1/BA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_1VY7_063 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_1VY7_065 | 1/BA/1171:1178 | No text annotation | homologous HL_7RQB_031 NA | |
| HL_1VY7_066 | 1/BA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_1VY7_067 | 1/BA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_1VY7_068 | 1/BA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_1VY7_069 | 1/BA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_1VY7_070 | 1/BA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_1VY7_071 | 1/BA/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_1VY7_072 | 1/BA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_1VY7_073 | 1/BA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_1VY7_074 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_1VY7_075 | 1/BA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_1VY7_076 | 1/BA/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_1VY7_077 | 1/BA/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_1VY7_078 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_1VY7_079 | 1/BA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_1VY7_080 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_1VY7_081 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_1VY7_082 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_1VY7_083 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_1VY7_084 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_1VY7_214 | 1/BA/2142:2149 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_1VY7_086 | 1/BA/2205:2219 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_1VY7_087 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_1VY7_088 | 1/BA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_1VY7_219 | 1/BA/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_1VY7_090 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_1VY7_091 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_1VY7_092 | 1/BA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_1VY7_093 | 1/BA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_1VY7_094 | 1/BA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_1VY7_095 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_1VY7_096 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_1VY7_097 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_1VY7_098 | 1/BA/2658:2663 | GNRA | geometric HL_5J7L_197 NA | |
| HL_1VY7_099 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_1VY7_100 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_1VY7_102 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_1VY7_103 | 1/BA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_1VY7_215 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_1VY7_104 | 1/BB/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_1VY7_105 | 1/BB/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_1VY7_106 | 1/CA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_1VY7_108 | 1/CA/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_1VY7_109 | 1/CA/189C:189H | No text annotation | homologous HL_4LFB_004 HL_89167.1 | |
| HL_1VY7_110 | 1/CA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_90436.1 | |
| HL_1VY7_111 | 1/CA/259:267 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_1VY7_112 | 1/CA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_1VY7_113 | 1/CA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_1VY7_114 | 1/CA/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_1VY7_115 | 1/CA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_1VY7_116 | 1/CA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_1VY7_117 | 1/CA/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_1VY7_118 | 1/CA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_1VY7_119 | 1/CA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_1VY7_120 | 1/CA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_1VY7_121 | 1/CA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_1VY7_122 | 1/CA/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_1VY7_216 | 1/CA/837:849 | No text annotation | geometric HL_5ID6_001 HL_69752.3 | |
| HL_1VY7_123 | 1/CA/838:848 | Mini UNCG | homologous HL_4LFB_018 HL_90436.1 | |
| HL_1VY7_124 | 1/CA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_1VY7_125 | 1/CA/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_1VY7_126 | 1/CA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_1VY7_127 | 1/CA/1012:1017 | No text annotation | homologous HL_6CZR_217 NA | |
| HL_1VY7_128 | 1/CA/1030:1031 | No text annotation | homologous HL_6CZR_235 NA | |
| HL_1VY7_129 | 1/CA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_1VY7_130 | 1/CA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_1VY7_131 | 1/CA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_1VY7_132 | 1/CA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_1VY7_133 | 1/CA/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_1VY7_134 | 1/CA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_1VY7_135 | 1/CA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_1VY7_136 | 1/CA/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_1VY7_137 | 1/CA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_1VY7_138 | 1/CX/13:22 | tRNA D-loop | homologous HL_1QF6_001 NA | |
| HL_1VY7_220 | 1/CX/31:39 | No text annotation | homologous HL_4V8N_144 NA | |
| HL_1VY7_140 | 1/CX/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H4S_003 HL_33597.1 | |
| HL_1VY7_141 | 1/DA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_1VY7_142 | 1/DA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_1VY7_143 | 1/DA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_1VY7_144 | 1/DA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_1VY7_146 | 1/DA/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_1VY7_147 | 1/DA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_1VY7_148 | 1/DA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_1VY7_149 | 1/DA/271I:271O | No text annotation | geometric HL_5J7L_018 NA | |
| HL_1VY7_150 | 1/DA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_1VY7_151 | 1/DA/319:323 | No text annotation | homologous HL_7A0S_011 HL_75660.6 | |
| HL_1VY7_152 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_1VY7_153 | 1/DA/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_1VY7_154 | 1/DA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_1VY7_155 | 1/DA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_1VY7_156 | 1/DA/487:493 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_1VY7_158 | 1/DA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_1VY7_159 | 1/DA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_1VY7_160 | 1/DA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_1VY7_161 | 1/DA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_1VY7_162 | 1/DA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_1VY7_163 | 1/DA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_1VY7_164 | 1/DA/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_1VY7_165 | 1/DA/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_1VY7_166 | 1/DA/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_1VY7_167 | 1/DA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_1VY7_168 | 1/DA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_1VY7_171 | 1/DA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_1VY7_172 | 1/DA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_1VY7_173 | 1/DA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_1VY7_174 | 1/DA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_1VY7_175 | 1/DA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_1VY7_176 | 1/DA/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_1VY7_177 | 1/DA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_1VY7_179 | 1/DA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_1VY7_180 | 1/DA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_1VY7_181 | 1/DA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_1VY7_182 | 1/DA/1691:1696 | UNCG | geometric HL_4PMI_004 NA | |
| HL_1VY7_183 | 1/DA/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_1VY7_184 | 1/DA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_1VY7_185 | 1/DA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_1VY7_186 | 1/DA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_1VY7_187 | 1/DA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_1VY7_188 | 1/DA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_1VY7_189 | 1/DA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_1VY7_190 | 1/DA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_1VY7_192 | 1/DA/2205:2219 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_1VY7_193 | 1/DA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_1VY7_194 | 1/DA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_1VY7_195 | 1/DA/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_1VY7_196 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_1VY7_197 | 1/DA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_1VY7_198 | 1/DA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_1VY7_199 | 1/DA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_1VY7_200 | 1/DA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_1VY7_201 | 1/DA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_1VY7_202 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_1VY7_203 | 1/DA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_1VY7_204 | 1/DA/2658:2663 | GNRA | homologous HL_5J7L_197 NA | |
| HL_1VY7_205 | 1/DA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_1VY7_206 | 1/DA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_1VY7_208 | 1/DA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_1VY7_209 | 1/DA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_1VY7_210 | 1/DB/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_1VY7_211 | 1/DB/86:91 | GNRA | homologous HL_7RQB_071 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1VY7_002 | No text annotation | ||
| HL_1VY7_003 | GNRA with extra near cWW | ||
| HL_1VY7_005 | No text annotation | ||
| HL_1VY7_213 | Mini UNCG | ||
| HL_1VY7_009 | No text annotation | ||
| HL_1VY7_023 | No text annotation | ||
| HL_1VY7_218 | No text annotation | ||
| HL_1VY7_051 | No text annotation | ||
| HL_1VY7_056 | No text annotation | ||
| HL_1VY7_064 | No text annotation | ||
| HL_1VY7_085 | No text annotation | ||
| HL_1VY7_089 | No text annotation | ||
| HL_1VY7_101 | No text annotation | ||
| HL_1VY7_107 | No text annotation | ||
| HL_1VY7_139 | No text annotation | ||
| HL_1VY7_145 | No text annotation | ||
| HL_1VY7_157 | No text annotation | ||
| HL_1VY7_169 | No text annotation | ||
| HL_1VY7_170 | No text annotation | ||
| HL_1VY7_178 | No text annotation | ||
| HL_1VY7_191 | UNCG | ||
| HL_1VY7_217 | No text annotation | ||
| HL_1VY7_207 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1VY7_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_1VY7_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_1VY7_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_1VY7_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_1VY7_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_1VY7_006 | 1/AA/67:69, 1/AA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_1VY7_007 | 1/AA/129:131, 1/AA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_1VY7_008 | 1/AA/132:136, 1/AA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_1VY7_338 | 1/AA/146:153, 1/AA/168:176 | No text annotation | ||
| IL_1VY7_009 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_1VY7_010 | 1/AA/186:188, 1/AA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_1VY7_011 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_1VY7_012 | 1/AA/249:252, 1/AA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_1VY7_013 | 1/AA/292:293, 1/AA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_1VY7_014 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_1VY7_015 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_1VY7_016 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_28408.1 | |
| IL_1VY7_017 | 1/AA/409:416, 1/AA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_1VY7_018 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_1VY7_339 | 1/AA/450:455, 1/AA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_1VY7_020 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_1VY7_021 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_1VY7_022 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_1VY7_023 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_1VY7_024 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_1VY7_360 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_1VY7_026 | 1/AA/605:612, 1/AA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_1VY7_027 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.1 | |
| IL_1VY7_028 | 1/AA/657:658, 1/AA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_1VY7_029 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_1VY7_340 | 1/AA/673:677, 1/AA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_1VY7_031 | 1/AA/683:688, 1/AA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_1VY7_032 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_1VY7_033 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_1VY7_034 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_1VY7_035 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_1VY7_036 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_1VY7_037 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_1VY7_038 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_1VY7_039 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_1VY7_040 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_1VY7_041 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_1VY7_042 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_1VY7_043 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_1VY7_044 | 1/AA/1061:1063, 1/AA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_1VY7_045 | 1/AA/1124:1127, 1/AA/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_1VY7_046 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_87975.1 | |
| IL_1VY7_047 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_1VY7_048 | 1/AA/1255:1258, 1/AA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_1VY7_049 | 1/AA/1259:1260, 1/AA/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_1VY7_341 | 1/AA/1260:1262, 1/AA/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_34520.1 | |
| IL_1VY7_051 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_1VY7_052 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_1VY7_053 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_1VY7_054 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.1 | |
| IL_1VY7_055 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_1VY7_342 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_1VY7_057 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_1VY7_058 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_1VY7_059 | 1/AA/1435:1437, 1/AA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_1VY7_060 | 1/AA/1440:1443, 1/AA/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_1VY7_061 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_1VY7_062 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_1VY7_361 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_34520.1 | |
| IL_1VY7_064 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_1VY7_065 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_1VY7_066 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_1VY7_067 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_1VY7_068 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_1VY7_070 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_1VY7_071 | 1/BA/288:290, 1/BA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_1VY7_072 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_1VY7_073 | 1/BA/481:484, 1/BA/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_1VY7_074 | 1/BA/564:566, 1/BA/575:577 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_1VY7_075 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_1VY7_076 | 1/BA/672:674, 1/BA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_1VY7_077 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_1VY7_078 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_1VY7_079 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_1VY7_080 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_1VY7_081 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_1VY7_082 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_1VY7_083 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_1VY7_084 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_1VY7_085 | 1/BA/846:850, 1/BA/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_1VY7_343 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9DFE_026 IL_38862.5 | |
| IL_1VY7_087 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_1VY7_088 | 1/BA/864:868, 1/BA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_1VY7_090 | 1/BA/875:877, 1/BA/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_1VY7_362 | 1/BA/877:881, 1/BA/895:899 | No text annotation | ||
| IL_1VY7_092 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_1VY7_093 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_1VY7_094 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_1VY7_095 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_1VY7_096 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_1VY7_097 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_1VY7_098 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_1VY7_099 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_1VY7_100 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_1VY7_101 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_1VY7_102 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_1VY7_103 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_1VY7_104 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_1VY7_105 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_1VY7_106 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_1VY7_107 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_1VY7_108 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_1VY7_109 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_1VY7_110 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_1VY7_111 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_1VY7_112 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_1VY7_113 | 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_1VY7_114 | 1/BA/1450A:1451, 1/BA/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_1VY7_115 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_1VY7_116 | 1/BA/1481:1482, 1/BA/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_1VY7_117 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_1VY7_118 | 1/BA/1526:1529, 1/BA/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_1VY7_119 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_1VY7_120 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_1VY7_121 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_1VY7_344 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_1VY7_122 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_1VY7_123 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_1VY7_124 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_1VY7_125 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_1VY7_126 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_1VY7_127 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_1VY7_128 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_1VY7_129 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_1VY7_130 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_1VY7_131 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_1VY7_132 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_1VY7_133 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_1VY7_134 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_1VY7_135 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_1VY7_136 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_1VY7_137 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_1VY7_138 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_1VY7_139 | 1/BA/2108:2110, 1/BA/2179:2181 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_71625.1 | |
| IL_1VY7_140 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation | geometric IL_3U4M_002 IL_32056.1 | |
| IL_1VY7_141 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_1VY7_345 | 1/BA/2124:2136, 1/BA/2155:2174 | No text annotation | ||
| IL_1VY7_142 | 1/BA/2128:2136, 1/BA/2155:2160 | Kink-turn | geometric IL_6HCT_001 NA | |
| IL_1VY7_143 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_1VY7_144 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_1VY7_145 | 1/BA/2401:2403, 1/BA/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_1VY7_146 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_1VY7_147 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_1VY7_346 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.7 | |
| IL_1VY7_149 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_1VY7_150 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_1VY7_151 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_1VY7_152 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_1VY7_153 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_1VY7_154 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_1VY7_155 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_1VY7_156 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_1VY7_157 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_1VY7_158 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_1VY7_159 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_1VY7_160 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_1VY7_161 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_1VY7_162 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_1VY7_163 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_1VY7_164 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_1VY7_165 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_1VY7_166 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_1VY7_167 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_1VY7_168 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_1VY7_169 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_1VY7_170 | 1/CA/30:32, 1/CA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_1VY7_171 | 1/CA/44:45, 1/CA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_1VY7_172 | 1/CA/47:52, 1/CA/359:361 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_1VY7_173 | 1/CA/54:56, 1/CA/356:357 | Minor groove platform | homologous IL_5J7L_004 NA | |
| IL_1VY7_174 | 1/CA/63:66, 1/CA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_1VY7_175 | 1/CA/67:69, 1/CA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_1VY7_176 | 1/CA/129:131, 1/CA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_1VY7_177 | 1/CA/132:136, 1/CA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_1VY7_178 | 1/CA/148:153, 1/CA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_1VY7_179 | 1/CA/186:188, 1/CA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_1VY7_180 | 1/CA/242:247, 1/CA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_1VY7_181 | 1/CA/249:252, 1/CA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_1VY7_182 | 1/CA/292:293, 1/CA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_1VY7_183 | 1/CA/367:369, 1/CA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_1VY7_184 | 1/CA/371:375, 1/CA/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_1VY7_185 | 1/CA/375:376, 1/CA/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_1VY7_347 | 1/CA/409:416, 1/CA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_1VY7_187 | 1/CA/446:450, 1/CA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_1VY7_188 | 1/CA/450:455, 1/CA/476:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_1VY7_189 | 1/CA/504:511, 1/CA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_1VY7_190 | 1/CA/515:521, 1/CA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_1VY7_191 | 1/CA/569:575, 1/CA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_1VY7_192 | 1/CA/580:584, 1/CA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_1VY7_193 | 1/CA/594:596, 1/CA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_1VY7_194 | 1/CA/597:598, 1/CA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_1VY7_195 | 1/CA/605:612, 1/CA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_1VY7_196 | 1/CA/654:655, 1/CA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_1VY7_197 | 1/CA/657:658, 1/CA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_1VY7_198 | 1/CA/662:666, 1/CA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_1VY7_348 | 1/CA/673:677, 1/CA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_1VY7_199 | 1/CA/683:688, 1/CA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_1VY7_200 | 1/CA/774:778, 1/CA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_1VY7_201 | 1/CA/779:783, 1/CA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_1VY7_202 | 1/CA/887:894, 1/CA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_1VY7_203 | 1/CA/922:923, 1/CA/1393:1395 | Single bulged A | homologous IL_6CZR_147 NA | |
| IL_1VY7_204 | 1/CA/925:927, 1/CA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_1VY7_350 | 1/CA/933:935, 1/CA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_1VY7_206 | 1/CA/953:954, 1/CA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_1VY7_207 | 1/CA/993:997, 1/CA/1044:1045 | Minor groove platform | homologous IL_6CZR_151 NA | |
| IL_1VY7_363 | 1/CA/1025:1029, 1/CA/1032:1036 | No text annotation | ||
| IL_1VY7_208 | 1/CA/1048:1050, 1/CA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_1VY7_209 | 1/CA/1052:1056, 1/CA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_1VY7_210 | 1/CA/1057:1058, 1/CA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_1VY7_211 | 1/CA/1060:1061, 1/CA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_1VY7_212 | 1/CA/1061:1063, 1/CA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.1 | |
| IL_1VY7_213 | 1/CA/1124:1127, 1/CA/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_1VY7_214 | 1/CA/1129:1132, 1/CA/1142:1143 | Minor groove platform | homologous IL_4LFB_049 IL_87975.1 | |
| IL_1VY7_215 | 1/CA/1158:1161, 1/CA/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_1VY7_216 | 1/CA/1247:1253, 1/CA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_1VY7_217 | 1/CA/1255:1258, 1/CA/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_1VY7_218 | 1/CA/1259:1260, 1/CA/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_1VY7_219 | 1/CA/1260:1262, 1/CA/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_34520.1 | |
| IL_1VY7_220 | 1/CA/1303:1308, 1/CA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_1VY7_221 | 1/CA/1399:1401, 1/CA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_1VY7_222 | 1/CA/1401:1404, 1/CA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_1VY7_223 | 1/CA/1405:1407, 1/CA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_1VY7_224 | 1/CA/1407:1409, 1/CA/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_29925.1 | |
| IL_1VY7_225 | 1/CA/1412:1414, 1/CA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_1VY7_226 | 1/CA/1416:1419, 1/CA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_1VY7_227 | 1/CA/1431:1435, 1/CA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_1VY7_228 | 1/CA/1435:1437, 1/CA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_1VY7_229 | 1/CA/1440:1443, 1/CA/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_1VY7_230 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_1VY7_231 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_1VY7_232 | 1/DA/42:43, 1/DA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_1VY7_233 | 1/DA/81:85, 1/DA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_1VY7_234 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_1VY7_235 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_1VY7_236 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_1VY7_237 | 1/DA/272D:272E, 1/DA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_1VY7_238 | 1/DA/272J:279, 1/DA/361:363 | No text annotation | ||
| IL_1VY7_353 | 1/DA/272:284, 1/DA/357:363 | No text annotation | ||
| IL_1VY7_239 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_1VY7_240 | 1/DA/288:290, 1/DA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_1VY7_241 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_1VY7_242 | 1/DA/481:484, 1/DA/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_1VY7_243 | 1/DA/564:566, 1/DA/575:577 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_1VY7_244 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_1VY7_245 | 1/DA/672:674, 1/DA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_1VY7_246 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_1VY7_247 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_1VY7_248 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_1VY7_249 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_1VY7_250 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_1VY7_251 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_1VY7_252 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_1VY7_253 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_1VY7_354 | 1/DA/844:850, 1/DA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_1VY7_254 | 1/DA/846:850, 1/DA/927:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_1VY7_255 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_1VY7_256 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_1VY7_257 | 1/DA/864:868, 1/DA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_1VY7_258 | 1/DA/875:880, 1/DA/897:902 | Triple sheared related | geometric IL_4V88_421 NA | |
| IL_1VY7_356 | 1/DA/875:884, 1/DA/892:902 | No text annotation | ||
| IL_1VY7_259 | 1/DA/880:884, 1/DA/892:897 | No text annotation | ||
| IL_1VY7_260 | 1/DA/952:954, 1/DA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_1VY7_261 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_1VY7_262 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_1VY7_263 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_1VY7_264 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_1VY7_265 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_1VY7_266 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_1VY7_267 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_1VY7_268 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_1VY7_269 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_1VY7_270 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_1VY7_271 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_1VY7_272 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_1VY7_273 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_1VY7_274 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_1VY7_275 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_1VY7_276 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_1VY7_277 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_1VY7_278 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_1VY7_279 | 1/DA/1433:1435, 1/DA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_1VY7_280 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_1VY7_281 | 1/DA/1448:1450, 1/DA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_1VY7_282 | 1/DA/1450A:1451, 1/DA/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_1VY7_283 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_1VY7_284 | 1/DA/1481:1482, 1/DA/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_1VY7_285 | 1/DA/1489:1491, 1/DA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_1VY7_286 | 1/DA/1526:1529, 1/DA/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_1VY7_287 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_1VY7_288 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.1 | |
| IL_1VY7_289 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_1VY7_357 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_1VY7_290 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_1VY7_291 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_1VY7_292 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_1VY7_293 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_1VY7_294 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_1VY7_295 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_1VY7_296 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_1VY7_297 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_1VY7_298 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_1VY7_299 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_1VY7_300 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_1VY7_301 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_1VY7_302 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_1VY7_303 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_1VY7_304 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_1VY7_305 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_1VY7_306 | 1/DA/2085:2087, 1/DA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_1VY7_307 | 1/DA/2108:2110, 1/DA/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_01003.1 | |
| IL_1VY7_308 | 1/DA/2110:2120, 1/DA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_1VY7_358 | 1/DA/2124:2127, 1/DA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_1VY7_311 | 1/DA/2297:2299, 1/DA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_1VY7_312 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_1VY7_313 | 1/DA/2401:2403, 1/DA/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_1VY7_314 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_1VY7_315 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_1VY7_316 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_1VY7_317 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_1VY7_318 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_1VY7_319 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_1VY7_320 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
| IL_1VY7_321 | 1/DA/2512:2513, 1/DA/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_1VY7_322 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_1VY7_323 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_1VY7_324 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_1VY7_325 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_1VY7_326 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_1VY7_327 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_1VY7_328 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_1VY7_329 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_1VY7_330 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_1VY7_331 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_1VY7_332 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_1VY7_333 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_1VY7_334 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_1VY7_365 | 1/DB/29:32, 1/DB/50:55 | No text annotation | homologous IL_7A0S_104 IL_05192.6 | |
| IL_1VY7_336 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_1VY7_337 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1VY7_019 | No text annotation | ||
| IL_1VY7_025 | 8-nt loop receptor | ||
| IL_1VY7_030 | No text annotation | ||
| IL_1VY7_050 | Minor groove platform with extra cWW | ||
| IL_1VY7_056 | Tandem non-canonical cWW pairs | ||
| IL_1VY7_063 | Major groove platform with extra cWW | ||
| IL_1VY7_069 | No text annotation | ||
| IL_1VY7_086 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_1VY7_089 | Isolated cWS basepair | ||
| IL_1VY7_091 | Double sheared with non-canonical cWW | ||
| IL_1VY7_148 | Major groove platform with extra pair | ||
| IL_1VY7_186 | No text annotation | ||
| IL_1VY7_349 | Isolated non-canonical cWW with bulges | ||
| IL_1VY7_205 | No text annotation | ||
| IL_1VY7_351 | No text annotation | ||
| IL_1VY7_352 | No text annotation | ||
| IL_1VY7_355 | No text annotation | ||
| IL_1VY7_309 | No text annotation | ||
| IL_1VY7_364 | Kink-turn | ||
| IL_1VY7_310 | No text annotation | ||
| IL_1VY7_359 | No text annotation | ||
| IL_1VY7_335 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1VY7_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_1VY7_055 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_1VY7_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_6CZR_016 NA | |
| J3_1VY7_056 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_1VY7_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_1VY7_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_1VY7_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_1VY7_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_1VY7_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_1VY7_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_1VY7_057 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_1VY7_009 | 1/AA/1002:1006, 1/AA/1023:1028, 1/AA/1033:1038 | No text annotation | homologous J3_6CZR_022 NA | |
| J3_1VY7_010 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_1VY7_075 | 1/AA/1073:1074, 1/AA/1083:1086, 1/AA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_1VY7_012 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_1VY7_013 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_1VY7_014 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_1VY7_058 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_1VY7_059 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_1VY7_015 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_1VY7_016 | 1/BA/269:271B, 1/BA/271V:272B, 1/BA/366:370 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_1VY7_060 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_1VY7_017 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_1VY7_018 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_1VY7_019 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_1VY7_020 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_1VY7_021 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_1VY7_061 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_1VY7_022 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_1VY7_062 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_1VY7_023 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_1VY7_024 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_1VY7_025 | 1/BA/2789:2792, 1/BA/2804:2811, 1/BA/2889:2894 | No text annotation | ||
| J3_1VY7_026 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_1VY7_027 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_1VY7_028 | 1/CA/46:47, 1/CA/361:367, 1/CA/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_1VY7_063 | 1/CA/46:52, 1/CA/359:367, 1/CA/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_1VY7_029 | 1/CA/586:588, 1/CA/651:654, 1/CA/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_1VY7_064 | 1/CA/586:588, 1/CA/651:655, 1/CA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_1VY7_065 | 1/CA/672:673, 1/CA/717:725, 1/CA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_1VY7_030 | 1/CA/826:829, 1/CA/857:861, 1/CA/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_1VY7_031 | 1/CA/936:939, 1/CA/1344:1350, 1/CA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_1VY7_032 | 1/CA/943:946, 1/CA/1235:1237, 1/CA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_1VY7_033 | 1/CA/955:962, 1/CA/973:984, 1/CA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_1VY7_034 | 1/CA/990:993, 1/CA/1045:1047, 1/CA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_1VY7_066 | 1/CA/990:997, 1/CA/1044:1047, 1/CA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_1VY7_067 | 1/CA/1001:1006, 1/CA/1023:1025, 1/CA/1036:1039 | No text annotation | ||
| J3_1VY7_035 | 1/CA/1002:1006, 1/CA/1023:1028, 1/CA/1033:1038 | No text annotation | ||
| J3_1VY7_036 | 1/CA/1063:1068, 1/CA/1107:1113, 1/CA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_1VY7_037 | 1/CA/1073:1074, 1/CA/1083:1087, 1/CA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_1VY7_038 | 1/CA/1116:1118, 1/CA/1155:1158, 1/CA/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_1VY7_068 | 1/CA/1116:1118, 1/CA/1155:1161, 1/CA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_1VY7_039 | 1/CA/1237:1241, 1/CA/1296:1303, 1/CA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_1VY7_040 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_1VY7_069 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_1VY7_070 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_1VY7_041 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_1VY7_042 | 1/DA/269:271B, 1/DA/271V:272B, 1/DA/366:370 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_1VY7_071 | 1/DA/297:301, 1/DA/316:325, 1/DA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_1VY7_043 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_1VY7_044 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_1VY7_045 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_1VY7_046 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_1VY7_047 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_1VY7_072 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_1VY7_048 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_1VY7_049 | 1/DA/2282:2284, 1/DA/2384:2395, 1/DA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_1VY7_073 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation | homologous J3_9DFE_016 J3_05327.1 | |
| J3_1VY7_051 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.6 | |
| J3_1VY7_053 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_1VY7_074 | 1/DB/11:16, 1/DB/68:69, 1/DB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J4_1VY7_001 | 1/AA/115:122, 1/AA/239:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_1VY7_029 | 1/AA/142:144, 1/AA/178:183, 1/AA/194:199, 1/AA/218:221 | No text annotation | ||
| J4_1VY7_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_1VY7_004 | 1/AX/7:10, 1/AX/25:27, 1/AX/43:49, 1/AX/65:66 | tRNA junction | homologous J4_9DFC_015 NA | |
| J4_1VY7_005 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_1VY7_006 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_1VY7_007 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_1VY7_008 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_1VY7_009 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_1VY7_010 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_1VY7_011 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_1VY7_012 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_1VY7_013 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_1VY7_014 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_1VY7_015 | 1/CA/115:122, 1/CA/239:240, 1/CA/286:289, 1/CA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_1VY7_016 | 1/CA/142:144, 1/CA/178:183, 1/CA/194:198, 1/CA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_1VY7_017 | 1/CA/575:577, 1/CA/764:769, 1/CA/810:821, 1/CA/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_1VY7_030 | 1/CX/7:10, 1/CX/25:27, 1/CX/43:49, 1/CX/65:66 | tRNA junction | homologous J4_4WT8_034 NA | |
| J4_1VY7_019 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_1VY7_020 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_1VY7_021 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_1VY7_022 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_1VY7_023 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_1VY7_024 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_1VY7_025 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_1VY7_026 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_1VY7_027 | 1/DA/2285:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_1VY7_028 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_1VY7_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_1VY7_002 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_1VY7_003 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_1VY7_004 | 1/BA/268:271, 1/BA/271:272, 1/BA/366:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | ||
| J5_1VY7_005 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_1VY7_006 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_1VY7_007 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_1VY7_008 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_1VY7_009 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_1VY7_020 | 1/CA/36:39, 1/CA/403:407, 1/CA/435:442, 1/CA/492:500, 1/CA/545:548 | No text annotation | ||
| J5_1VY7_011 | 1/CA/58:61, 1/CA/106:113, 1/CA/314:316, 1/CA/337:339, 1/CA/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J5_1VY7_012 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_1VY7_013 | 1/DA/268:271, 1/DA/271:272, 1/DA/366:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | ||
| J5_1VY7_014 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_1VY7_015 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_1VY7_016 | 1/DA/601:604, 1/DA/624:628, 1/DA/635:638, 1/DA/650:652, 1/DA/652:656 | No text annotation | ||
| J5_1VY7_017 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_1VY7_018 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2507, 1/DA/2582:2588, 1/DA/2606:2611 | No text annotation | ||
| J5_1VY7_019 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J6_1VY7_001 | 1/BA/44:45, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_1VY7_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J6_1VY7_003 | 1/DA/44:45, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_1VY7_004 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_1VY7_001 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J7_1VY7_002 | 1/DA/817:822, 1/DA/835:836, 1/DA/943:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation | ||
| J8_1VY7_001 | 1/BA/8:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2791, 1/BA/2805:2811, 1/BA/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1VY7_011 | No text annotation | ||
| J3_1VY7_050 | No text annotation | ||
| J3_1VY7_052 | No text annotation | ||
| J3_1VY7_054 | No text annotation | ||
| J4_1VY7_002 | No text annotation | ||
| J4_1VY7_018 | No text annotation | ||
| J5_1VY7_010 | No text annotation |
Coloring options: