HL_1VY7_113

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY7_113 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1095

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1VY7|1|CA|C|320
1VY7|1|CA|A|321
1VY7|1|CA|C|322
1VY7|1|CA|U|323
1VY7|1|CA|G|324
1VY7|1|CA|A|325
1VY7|1|CA|G|326
1VY7|1|CA|A|327
1VY7|1|CA|C|328
1VY7|1|CA|A|329
1VY7|1|CA|C|330
1VY7|1|CA|G|331
1VY7|1|CA|G|332
1VY7|1|CA|G|333

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20