HL_1VY7_114

3D structure

PDB id

1VY7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

1VY7|1|CA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY7_114 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1115

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

1VY7|1|CA|C|342
1VY7|1|CA|U|343
1VY7|1|CA|A|344
1VY7|1|CA|C|345
1VY7|1|CA|G|346
1VY7|1|CA|G|347

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain DO

50S ribosomal protein L14

Chain DT

50S ribosomal protein L19