HL_1W2B_001
3D structure
- PDB id
- 1W2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Trigger Factor ribosome binding domain in complex with 50S
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGCCAAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1W2B_001 not in the Motif Atlas
- Homologous match to HL_4V9F_001
- Geometric discrepancy: 0.0751
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
1W2B|1|0|U|55
1W2B|1|0|G|56
1W2B|1|0|C|57
1W2B|1|0|C|58
1W2B|1|0|A|59
1W2B|1|0|A|60
1W2B|1|0|G|61
1W2B|1|0|C|62
1W2B|1|0|U|63
1W2B|1|0|G|64
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L39E
- Chain R
- 50S RIBOSOMAL PROTEIN L23P
- Chain U
- 50S RIBOSOMAL PROTEIN L24E
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